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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G554330
Reference: TK1151 Chr: Chr01 Coordinates: 139404637-139406797 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1282 bp · TkA01G554330|TK1151|cDNA

CCCCCCATTACGTACCCTTACCTTCTTATATAAATCAAACTCTCCATCATTCAAAACTAACACCACCCCCTTCTTCCCAATTCAAGAAAATGGGCGACATTTCTTGCTCCAATGGCAACGGTAACGGTAACAGCAATGGCAATGGCAATGTCTATTCTCAGAGGAAAAGCTGCTGGTACGAGGAAGAGATCGAAGAGAACTTACGATGGTGTTTTGCTCTCAACAGTATACTTCACACCGGAGCCACTCAATTCCAAGAT...

CDS

Download CDS FASTA

1005 bp · TkA01G554330|TK1151|CDS

ATGGGCGACATTTCTTGCTCCAATGGCAACGGTAACGGTAACAGCAATGGCAATGGCAATGTCTATTCTCAGAGGAAAAGCTGCTGGTACGAGGAAGAGATCGAAGAGAACTTACGATGGTGTTTTGCTCTCAACAGTATACTTCACACCGGAGCCACTCAATTCCAAGATATTCAGCTTTTGGACACTAAACCCTTCGGGAAGGCTCTTGTAATCGATGGAAAGTTGCAAAGTGCGGAGATAGATGAGTTCATCTACCA...

Protein

Download Protein FASTA

334 aa · TkA01G554330|TK1151|PROTEIN

MGDISCSNGNGNGNSNGNGNVYSQRKSCWYEEEIEENLRWCFALNSILHTGATQFQDIQLLDTKPFGKALVIDGKLQSAEIDEFIYHESLVHPALIHHSNPKTIFVMGGGEGSTARELLRHKTVNKVVMCDIDEEVVEFCKSYLAVNSDAFCDPRLELIINDARAELEKREDKYDVIIGDLADPLEGGPCYQLYTKTFYELTVKPKLKEGGIFVTQAGPAGVFSHTEVFTCIFNTLKQVFKYVVPYSAHIPSYADIWGWV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G554330
TK1151 IDTkA01G554330
OH-1004 IDLXL04_001217
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.100
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G554330
LocationChr01:139404637-139406797 (-)
DescriptionSimilar to ACL5: Thermospermine synthase ACAULIS5
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g19530 Required for correct xylem specification through regulation of the lifetime of the xylem elements.
ACAULIS5, an Arabidopsis gene required for stem elongation, encodes a spermine synthase.2000 · DOI: 10.1093/emboj/19.16.4248
ACAULIS5 controls Arabidopsis xylem specification through the prevention of premature cell death.2008 · DOI: 10.1242/dev.019349
Thermospermine is required for stem elongation in Arabidopsis thaliana.2008 · DOI: 10.1093/pcp/pcn109

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_001217 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006596 polyamine biosynthetic process Biological Process
GO:0008295 spermidine biosynthetic process Biological Process
GO:0009926 auxin polar transport Biological Process
GO:0010087 phloem or xylem histogenesis Biological Process
GO:0048759 xylem vessel member cell differentiation Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0004766 spermidine synthase activity Molecular Function
GO:0010487 thermospermine synthase activity Molecular Function
GO:0016768 spermine synthase activity Molecular Function
GO:0050314 sym-norspermidine synthase activity Molecular Function
KEGG gene cross-reference
ape:APE_0767.1
ath:AT5G19530
hbu:Hbut_0383
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.681
Rank 1 · TkA01G554330 · TK1151
Nucleus0.545
Rank 2 · TkA01G554330 · TK1151
Mitochondrion0.073
Rank 3 · TkA01G554330 · TK1151
Cell membrane0.046
Rank 4 · TkA01G554330 · TK1151
Endoplasmic reticulum0.033
Rank 5 · TkA01G554330 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01564Spermine_synth18-38 aa
PF17284Spermine_synt_N29-80 aa
PF01564Spermine_synth83-263 aa
PF29762OWP_N100-150 aa
PF01861BpsA_C101-183 aa
PF05175MTS102-178 aa
PF30636Methyltransf_37102-179 aa
PF13649Methyltransf_25107-178 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G554330PF01564Spermine_synth18388.6e-47159.8
TkA01G554330PF17284Spermine_synt_N29803.1e-1350.1
TkA01G554330PF01564Spermine_synth832638.6e-47159.8
TkA01G554330PF29762OWP_N1001500.1613.6
TkA01G554330PF01861BpsA_C1011830.03214.2
TkA01G554330PF05175MTS1021780.001718.6
TkA01G554330PF30636Methyltransf_371021790.1213.1
TkA01G554330PF13649Methyltransf_251071780.0001623.0
TkA01G554330PF08242Methyltransf_121071780.001320.2
TkA01G554330PF08241Methyltransf_111071780.05214.9
TkA01G554330PF01795Methyltransf_51101510.3311.1
TkA01G554330PF05430Methyltransf_301221520.03414.8
TkA01G554330PF05430Methyltransf_301552150.03414.8
TkA01G554330PF17412VraX1862040.212.1
TkA01G554330PF05175MTS2192280.001718.6
TkA01G554330PF17412VraX2232300.212.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9S7X6Arabidopsis thalianasp|Q9S7X6|ACL5_ARATH Thermospermine synthase ACL564.800%Swiss-ProtHigh

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