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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G551530
Reference: TK1151 Chr: Chr01 Coordinates: 138627773-138632420 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4081 bp · TkA01G551530|TK1151|cDNA

GGGTAATGGAGGAAAAGGGTTTTGCCTGCTAAATGTTACAGGTATACAATTCCATTAGACCACCCCCAGATACACACTGCTATTCTTCCAACACACGCAAATCCAAGTCTTTGGGTTGAAATTGGGTTTCCCCTAATTAAAATTCCTCAATCGACATTTTCCGCCGGATAACTTTGCTCATTGTTTACTAAATTCCCGATCTGTATGTGTCCTCGCTTGGCGATGTTTCTGTTATGTCGGATTTGATAGAATTGGGGGGT...

CDS

Download CDS FASTA

3351 bp · TkA01G551530|TK1151|CDS

ATGAAAGACGTGGGGAGATCTATTCATTCTATAGATGTGGTAAAGAAAAAAAGCTCTTCCGGATGCTTGATTATCAAAAAGAAGGTAACAGATGGTGTTGGGGGAGTTCAAGGGTTTAGTGATTCGCCATCAAAGAAGCTATATCACTCCACAAAAGAGAAAAAAAGACCTCGAGCGATTAGGAGTGATTCCGAGTCCAGTGATGAGTTCACAGAGCCTTACCGCCAAAAACTTGATAATTTTCACAATGGTACAGCTTT...

Protein

Download Protein FASTA

1116 aa · TkA01G551530|TK1151|PROTEIN

MKDVGRSIHSIDVVKKKSSSGCLIIKKKVTDGVGGVQGFSDSPSKKLYHSTKEKKRPRAIRSDSESSDEFTEPYRQKLDNFHNGTAFTHRGFMANRESETGKRVNNGINLHEFDEYNAFHERTNRKDVKDHRHGLKLHWQSGDLMNSASGSSSRIINDNRRDFLHDNRNSLLAGKSSKTKSHLPLKHQEVFNEPNQPIRLQGKNGVLKVMVNKHKQMSHPHQSYVPQEHEDWKESKPVVYKKKHHNTSHKPHDHWEGLDR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G551530
TK1151 IDTkA01G551530
OH-1004 IDLXL04_001244
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G551530
LocationChr01:138627773-138632420 (-)
DescriptionSimilar to IDM1: Increased DNA methylation 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g14980 Histone H3 acetyltransferase that binds methylated DNA at chromatin sites lacking histone H3K4 di- or trimethylation and catalyzes H3K18 and H3K23 acetylation.
A histone acetyltransferase regulates active DNA demethylation in Arabidopsis.2012 · DOI: 10.1126/science.1219416
Antisilencing role of the RNA-directed DNA methylation pathway and a histone acetyltransferase in Arabidopsis.2012 · DOI: 10.1073/pnas.1208557109
Regulation of active DNA demethylation by an α-crystallin domain protein in Arabidopsis.2014 · DOI: 10.1016/j.molcel.2014.06.008

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_001244 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process
GO:0000724 double-strand break repair via homologous recombination Biological Process
GO:0006325 chromatin organization Biological Process
GO:0006338 chromatin remodeling Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006357 regulation of transcription by RNA polymerase II Biological Process
GO:0007064 mitotic sister chromatid cohesion Biological Process
GO:0007283 spermatogenesis Biological Process
GO:0010629 negative regulation of gene expression Biological Process
GO:0030261 chromosome condensation Biological Process
GO:0034728 nucleosome organization Biological Process
GO:0042659 regulation of cell fate specification Biological Process
KEGG gene cross-reference
ath:AT3G14980
dme:Dmel_CG8103
dme:Dmel_CG9594
hsa:1108
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.974
Rank 1 · TkA01G551530 · TK1151
Cytoplasm0.069
Rank 2 · TkA01G551530 · TK1151
Cell membrane0.026
Rank 3 · TkA01G551530 · TK1151
Endoplasmic reticulum0.014
Rank 4 · TkA01G551530 · TK1151
Plastid0.010
Rank 5 · TkA01G551530 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22970DUF7028349-413 aa
PF16135TDBD560-610 aa
PF00130C1_1563-573 aa
PF23011PHD-1st_NSD635-677 aa
PF23004PHDvar_NSD637-663 aa
PF00628PHD638-677 aa
PF15446zf-PHD-like638-664 aa
PF14446Prok-RING_1638-662 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G551530PF22970DUF70283494133.8e-1556.3
TkA01G551530PF16135TDBD5606107.7e-1968.2
TkA01G551530PF00130C1_15635731.89.2
TkA01G551530PF23011PHD-1st_NSD6356770.0001622.5
TkA01G551530PF23004PHDvar_NSD6376630.0001922.1
TkA01G551530PF00628PHD6386774.6e-0833.7
TkA01G551530PF15446zf-PHD-like6386640.959.7
TkA01G551530PF14446Prok-RING_16386627.97.4
TkA01G551530PF00130C1_16396621.89.2
TkA01G551530PF13831PHD_26476780.0001621.8
TkA01G551530PF00130C1_16787111.89.2
TkA01G551530PF14446Prok-RING_16787087.97.4
TkA01G551530PF00628PHD6797074.6e-0833.7
TkA01G551530PF23004PHDvar_NSD6797070.0001922.1
TkA01G551530PF15446zf-PHD-like6797060.959.7
TkA01G551530PF13831PHD_26917060.0001621.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4IXE7Arabidopsis thalianasp|F4IXE7|IDM1_ARATH Increased DNA methylation 142.100%Swiss-ProtLow

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