TkA01G550370 | RubberDandelionOmics

Gene overview

TkA01G550370

Reference: TK1151 Chr: Chr01 Coordinates: 138338393-138341864 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1561 bp · TkA01G550370|TK1151|cDNA

AAAGAATTGAAAAAGTGTTGAAGACCGAGCAGAGCACGCATCTTGAGGATAACGACATGCCCAAAGACATGTTCTTTCTCCTCTTTGAGAAATACCCACCACACCAAATCTCATTCACATCCTCCAACCCGCACCCCTCTTCTACATTCCTTTACTCGATCCGTTTCTCGCTATCTATGTAAATCGATAACGTTTTAGGACGATTCCCGTGTTAATAGGTAGGTTAGGAAGATAAAAATGAGTATGATCGCCATGGATGC...

CDS

Download CDS FASTA

975 bp · TkA01G550370|TK1151|CDS

ATGAGTATGATCGCCATGGATGCTACGATGGAAAAAGGGGTGTTGGATGATATAATTAGGAGGTTGTTGGATGGTAGAGGAGGGAAACAGGTCCAGCTTTCGGAGGCGGAGATCCGCCAGCTTTGCGTCAACGCCAGACAAATTTTCCTTTCTCAACCTAATCTCCTGCAGCTGCGTGCGCCCATCAGGATCTGCGGTGATATACATGGACAATACCAAGACCTGTTAAGGCTATTTGAGTATGGTGGCTATCCACCAAT...

Protein

Download Protein FASTA

324 aa · TkA01G550370|TK1151|PROTEIN

MSMIAMDATMEKGVLDDIIRRLLDGRGGKQVQLSEAEIRQLCVNARQIFLSQPNLLQLRAPIRICGDIHGQYQDLLRLFEYGGYPPIENYLFLGDYVDRGKQSLETICLLLAYKIRYPDKVFLLRGNHEDAKINRIYGFYDECKRRFNVRLWKIFTDCFNCLPVAALVDEKILCMHGGLSPDLENLKQISDIERPTEIPDNGLLCDLLWSDPDPNIEGWSDSDRGVSCTFGADKVVEFLAKNDLDLICRGHQVVEDGYEF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G550370`
TK1151 ID	TkA01G550370
OH-1004 ID	LXL04_001263
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 97.840 / OH-1004 99.062 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G550370

Location Chr01:138338393-138341864 (+)

Description Similar to TOPP9: Serine/threonine-protein phosphatase PP1 isozyme 9

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g05580`	Serine/threonine-protein phosphatase that possesses phosphatase activity toward para-nitrophenyl phosphate (pNPP) in vitro.	No verified direct reference in this release
`At5g27840`	Serine/threonine-protein phosphatase that possesses phosphatase activity toward para-nitrophenyl phosphate (pNPP) in vitro.	No verified direct reference in this release
`At5g59160`	Serine/threonine-protein phosphatase that possesses phosphatase activity toward para-nitrophenyl phosphate (pNPP) in vitro.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0268000`	Serine/threonine-protein phosphatase PP1.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001263 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009860 pollen tube growth Biological Process

GO:0048768 root hair cell tip growth Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0004722 protein serine/threonine phosphatase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT3G05580

ath:AT5G27840

dosa:Os03g0268000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.622

Rank 1 · TkA01G550370 · TK1151

Nucleus0.560

Rank 2 · TkA01G550370 · TK1151

Cell membrane0.052

Rank 3 · TkA01G550370 · TK1151

Mitochondrion0.050

Rank 4 · TkA01G550370 · TK1151

Endoplasmic reticulum0.041

Rank 5 · TkA01G550370 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16891STPPase_N15-59 aa

PF00149Metallophos61-254 aa

PF16891STPPase_N237-249 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G550370	`PF16891`	STPPase_N	15	59	8.3e-20	71.7
TkA01G550370	`PF00149`	Metallophos	61	254	5.7e-49	167.9
TkA01G550370	`PF16891`	STPPase_N	237	249	8.3e-20	71.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M9W3`	Arabidopsis thaliana	sp\|Q9M9W3\|PP19_ARATH Serine/threonine-protein phosphatase PP1 isozyme 9	86.300%	Swiss-Prot	High
`O82734`	Arabidopsis thaliana	sp\|O82734\|PP18_ARATH Serine/threonine-protein phosphatase PP1 isozyme 8	86.000%	Swiss-Prot	High
`P48482`	Arabidopsis thaliana	sp\|P48482\|PP12_ARATH Serine/threonine-protein phosphatase PP1 isozyme 2	76.300%	Swiss-Prot	High
`P48489`	Oryza sativa subsp. japonica	sp\|P48489\|PP1_ORYSJ Serine/threonine-protein phosphatase PP1	77.800%	Swiss-Prot	High

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