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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G548710
Reference: TK1151 Chr: Chr01 Coordinates: 137830138-137835425 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3824 bp · TkA01G548710|TK1151|cDNA

GTTTATACGAATTTGCTACGAAATCAGTTTGGAAATTACCATAATACCCATTGTACAGTACAAATACCCTCATCTTCTGTAGATTTTAGGGTTCTTGCTCTTCAAGCCGAAGCCCTCAAACCTTCTTTCTTCCTCTGTTCATCACCCCAAAGTCATCCAATTTATACGTCGATATAAATTAACACAATGCATCATCCTAATTGATAATTCTTTCTTCCGTATATGTTTTATTTCACACTCCAAACCCTATCAAAATCTCA...

CDS

Download CDS FASTA

3279 bp · TkA01G548710|TK1151|CDS

ATGCAGATATTGAATTCGGAAGAAGCAGTAGTTGTTCCAACTGATAACCATGATTGCACCACCACCGCAACCGAAAACATCGAAGAAGAGTTGGAGGAGAACTCGAATGTAGAATCCGCAATCGATGCTTCTGGAAAGACTTTGGATCTTCAGGTTTTGGATGAGAGGAGGCTTAGTGATGGTGATAACTCTTCAATAGAGGGTTTATACGTGTACAAAAATACGTTCAATTTGATTCCTCGATCGGTAGGGGGTTTGGT...

Protein

Download Protein FASTA

1092 aa · TkA01G548710|TK1151|PROTEIN

MQILNSEEAVVVPTDNHDCTTTATENIEEELEENSNVESAIDASGKTLDLQVLDERRLSDGDNSSIEGLYVYKNTFNLIPRSVGGLVRLKTLKFFGNEVNLFPSEFGNLVNLERLQVKISLPGLTGLPLQKLKALKELELSKAPPRPSAFPLLGDIMGLERLTKLSVCHFSIRYLPPEIGCLTCLEYLDLSHNKMRNLPTEISNLSALITLKVTNNKLIEIPTALSSLQRLENLDLSNNRLTSLGSLELDTMHNLRRLNL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G548710
TK1151 IDTkA01G548710
OH-1004 IDLXL04_001301
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)97.600
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G548710
LocationChr01:137830138-137835425 (+)
DescriptionSimilar to scrib: Protein lap4
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g24360 Serine/threonine protein kinase that phosphorylates proteins on serine, threonine and tyrosine residues.
Genome-wide analysis and experimentation of plant serine/ threonine/tyrosine-specific protein kinases.2006 · DOI: 10.1007/s11103-005-4109-7

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_001301 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000902 cell morphogenesis Biological Process
GO:0001708 cell fate specification Biological Process
GO:0006611 protein export from nucleus Biological Process
GO:0007118 budding cell apical bud growth Biological Process
GO:0007163 establishment or maintenance of cell polarity Biological Process
GO:0008285 negative regulation of cell population proliferation Biological Process
GO:0030100 regulation of endocytosis Biological Process
GO:0035088 establishment or maintenance of apical/basal cell polarity Biological Process
GO:0035556 intracellular signal transduction Biological Process
GO:0043113 receptor clustering Biological Process
GO:0045175 basal protein localization Biological Process
GO:0045186 zonula adherens assembly Biological Process
KEGG gene cross-reference
ddi:DDB_G0278863
dme:Dmel_CG43398
sce:YHR102W
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.540
Rank 1 · TkA01G548710 · TK1151
Nucleus0.361
Rank 2 · TkA01G548710 · TK1151
Cell membrane0.121
Rank 3 · TkA01G548710 · TK1151
Golgi apparatus0.073
Rank 4 · TkA01G548710 · TK1151
Mitochondrion0.065
Rank 5 · TkA01G548710 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13855LRR_863-98 aa
PF00560LRR_166-86 aa
PF23598LRR_1476-165 aa
PF14580LRR_987-140 aa
PF12799LRR_488-117 aa
PF00560LRR_188-109 aa
PF25019LRR_R13L1-DRL2188-142 aa
PF13855LRR_8104-141 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G548710PF13855LRR_863981.9e-1144.2
TkA01G548710PF00560LRR_166865.4e-0626.2
TkA01G548710PF23598LRR_14761656.3e-1968.7
TkA01G548710PF14580LRR_9871400.002118.4
TkA01G548710PF12799LRR_4881171.2e-1248.3
TkA01G548710PF00560LRR_1881095.4e-0626.2
TkA01G548710PF25019LRR_R13L1-DRL21881420.03514.7
TkA01G548710PF13855LRR_81041411.9e-1144.2
TkA01G548710PF24048LRR_NXF1-51051424.47.7
TkA01G548710PF12799LRR_41281411.2e-1248.3
TkA01G548710PF23211LRR_LRWD11291424.4e-0524.0
TkA01G548710PF24758LRR_At5g563701301960.06813.5
TkA01G548710PF23598LRR_141542656.3e-1968.7
TkA01G548710PF23952LRR_EndoS1552390.0001622.5
TkA01G548710PF25019LRR_R13L1-DRL211602140.03514.7
TkA01G548710PF12799LRR_41612031.2e-1248.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZQ31Arabidopsis thalianasp|Q9ZQ31|STY13_ARATH Serine/threonine-protein kinase STY1330.800%Swiss-ProtLow

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