Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1248 bp · TkA01G546250|TK1151|cDNA
CTACGGCCGATTTCTGTATGCGATTATCCCTGATTCTTCTCGCCCTCCCCACCGCTTTCTCCGTTCTTCTCATCCTGCCTTTTGAAGTCAATTTGGCTTTACTCCTACAAGGATCGATGCGTTTGTAGAACGCCGAAGAGGTTAACCACGAAGTCCTTTTCCGATGGTCCACACGAATAATTGGGTCGAATCAGGCGATGTTGATCAGTCGAAATCATCGATTCCGATTTCCGGTTTTCATCGCCGTTACATCCAATCAC...
972 bp · TkA01G546250|TK1151|CDS
ATGCGTCCCTCCGTCCGGTCAGCATCCGTCATTGCAGCAATCGTCGCATCCTTTCTTTTCATCTTATCACCGGTGTTCGCCTCTGAGTATGATCACAAGTATCAACCAGATGAAAAAGTCACCCTTTGGGTGAATAAAGTTGGGCCTTACAATAATCCACAAGAGACATACAATTTCTACAGTCTTCCATTTTGTCACCTACCTGGACATGCTGCACACAAGTGGGGTGGTCTTGAGATTGTGGAAAAGACCTCTGTCTG...
Protein
Download Protein FASTA323 aa · TkA01G546250|TK1151|PROTEIN
MRPSVRSASVIAAIVASFLFILSPVFASEYDHKYQPDEKVTLWVNKVGPYNNPQETYNFYSLPFCHLPGHAAHKWGGLEIVEKTSVCKLELDEPKVMQFKQAIENNYWFELFMDDLPLYGFVGELHDRNTDNKHMLFTHMNITLQYNKDQIIHVNLTQESPKPLEAGRTLDMTYSVKWTETNITFARRFDVYLDYHFFKHQLNARNHHHQMKVNGVDHHDHEEEGFKKEMRNLAEMLSKLNPMAEEFVPPSLSNNNYNAP...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA01G546250 |
|---|---|
| TK1151 ID | TkA01G546250 |
| OH-1004 ID | LXL04_037005 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 93.200 |
| Protein coverage (%) | TK1151 81.734 / OH-1004 48.364Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA01G546250 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:137171041-137173331 (+) | |||||||||
| Description | Similar to CID11: Polyadenylate-binding protein-interacting protein 11 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0000166 nucleotide binding Molecular Function GO:0003723 RNA binding Molecular Function GO:0003729 mRNA binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G32790 ath:AT1G53650 ath:AT3G14450 ath:AT3G49390 ath:AT4G10610 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF02990EMP7082-201 aaPF07145PAM2199-203 aaPF07145PAM2236-251 aaPF02990EMP70296-321 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA01G546250 | PF02990 | EMP70 | 82 | 201 | 1.5e-22 | 80.7 |
| TkA01G546250 | PF07145 | PAM2 | 199 | 203 | 6.5e-06 | 26.2 |
| TkA01G546250 | PF07145 | PAM2 | 236 | 251 | 6.5e-06 | 26.2 |
| TkA01G546250 | PF02990 | EMP70 | 296 | 321 | 1.5e-22 | 80.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.