TkA01G544170 | RubberDandelionOmics

Gene overview

TkA01G544170

Reference: TK1151 Chr: Chr01 Coordinates: 136492158-136494870 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1668 bp · TkA01G544170|TK1151|cDNA

ATACAACATTTCATTAGCGATGACCATTTTTGTAGATACACAGCAACTCTTCAATCCACTCTGGCGGGAAAACACAAATAACCCTCTTCCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACAGAAAAGAAAGATGTCTACGTTCGATTATCCGAAACTCCGCCGGCGAGATATCATCGGAGTACTCGCCGACTCAAAAATTGCCACCGTCTCTGATTCCGAACTCATCAACCCTAGACCCGACTTCATCAT...

CDS

Download CDS FASTA

1332 bp · TkA01G544170|TK1151|CDS

ATGTCTACGTTCGATTATCCGAAACTCCGCCGGCGAGATATCATCGGAGTACTCGCCGACTCAAAAATTGCCACCGTCTCTGATTCCGAACTCATCAACCCTAGACCCGACTTCATCATTAATCTCTACACTCAAATACTCATCCACATCGGCTGTCTCATGGAAGATTACGGACTAGTCGAATTTGCAGACCTTGAGCAACTTGAAAACCCGGATTCGCATGTTGACTCGGTAAGAATGATGAATTTGTTCAACAAAAT...

Protein

Download Protein FASTA

443 aa · TkA01G544170|TK1151|PROTEIN

MSTFDYPKLRRRDIIGVLADSKIATVSDSELINPRPDFIINLYTQILIHIGCLMEDYGLVEFADLEQLENPDSHVDSVRMMNLFNKIKEVIAALDCPKQINLKDLLKPEADRTEFFLGALLNFSIHRDTRMTLLRPVVEDVTILDEQKQEIEARISQLNAEISEFNESREKELPLIQEVDIKIKELRQMISALNNQQMSLKAAFRKKKDAVKEMDEKISSAEFALVQSAQENASLRSKIVQSPVKLQRQLEEKKAVLIES...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G544170`
TK1151 ID	TkA01G544170
OH-1004 ID	LXL04_001357
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.200
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G544170

Location Chr01:136492158-136494870 (+)

Description Similar to NUF2: Kinetochore protein NUF2 homolog

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g61000`	Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity to ensure proper cell division.	MUN (MERISTEM UNSTRUCTURED), encoding a SPC24 homolog of NDC80 kinetochore complex, affects development through cell division in Arabidopsis thaliana.2018 · DOI: 10.1111/tpj.13823

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001357 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000070 mitotic sister chromatid segregation Biological Process

GO:0007052 mitotic spindle organization Biological Process

GO:0007059 chromosome segregation Biological Process

GO:0008608 attachment of spindle microtubules to kinetochore Biological Process

GO:0010342 endosperm cellularization Biological Process

GO:0045132 meiotic chromosome segregation Biological Process

GO:0051301 cell division Biological Process

GO:0051315 attachment of mitotic spindle microtubules to kinetochore Biological Process

GO:0051383 kinetochore organization Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0000776 kinetochore Cellular Component

GO:0000779 condensed chromosome, centromeric region Cellular Component

KEGG gene cross-reference

ath:AT1G61000

cnb:CNBA6390

rno:304951

sce:YOL069W

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.580

Rank 1 · TkA01G544170 · TK1151

Cytoplasm0.350

Rank 2 · TkA01G544170 · TK1151

Golgi apparatus0.053

Rank 3 · TkA01G544170 · TK1151

Lysosome / Vacuole0.043

Rank 4 · TkA01G544170 · TK1151

Cell membrane0.042

Rank 5 · TkA01G544170 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03800Nuf23-155 aa

PF12918TcdB_N82-91 aa

PF20186DUF6549138-205 aa

PF24611Spectrin_Anc-1142-162 aa

PF09278MerR-DNA-bind142-160 aa

PF30852Astrin_C144-302 aa

PF12918TcdB_N145-172 aa

PF18661AvrLm4-7145-175 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G544170	`PF03800`	Nuf2	3	155	3.5e-30	105.8
TkA01G544170	`PF12918`	TcdB_N	82	91	0.38	11.8
TkA01G544170	`PF20186`	DUF6549	138	205	0.023	15.5
TkA01G544170	`PF24611`	Spectrin_Anc-1	142	162	0.00094	20.2
TkA01G544170	`PF09278`	MerR-DNA-bind	142	160	1.9	9.9
TkA01G544170	`PF30852`	Astrin_C	144	302	0.37	11.1
TkA01G544170	`PF12918`	TcdB_N	145	172	0.38	11.8
TkA01G544170	`PF18661`	AvrLm4-7	145	175	4.8	8.9
TkA01G544170	`PF28422`	CCDC89	149	311	4.6	7.2
TkA01G544170	`PF24611`	Spectrin_Anc-1	150	200	0.00094	20.2
TkA01G544170	`PF03800`	Nuf2	165	196	3.5e-30	105.8
TkA01G544170	`PF12918`	TcdB_N	177	203	0.38	11.8
TkA01G544170	`PF09278`	MerR-DNA-bind	177	194	1.9	9.9
TkA01G544170	`PF30381`	CEP135_N	179	309	0.55	9.8
TkA01G544170	`PF20186`	DUF6549	192	288	0.023	15.5
TkA01G544170	`PF24611`	Spectrin_Anc-1	245	317	0.00094	20.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8RXJ0`	Arabidopsis thaliana	sp\|Q8RXJ0\|NUF2_ARATH Kinetochore protein NUF2 homolog	49.300%	Swiss-Prot	Medium

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