TkA01G542510 | RubberDandelionOmics

Gene overview

TkA01G542510

Reference: TK1151 Chr: Chr01 Coordinates: 136102888-136105953 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1459 bp · TkA01G542510|TK1151|cDNA

CCGGCGTTAATCAAACATTTTCATCACCGTTACCCTGGTTTTTAAAACACTGCATAGAACACTAACATGTACATCTTCATCATTATCAAGATTGTGTACAAATTCTGAAATTTTGCTATTATTTTCAAATTCGATTCAAAGACAGTCATGATTATGGTAACTCTTATAGAGTTATAGCAATTAGTAATTACTTAACAATTTGGTTCCGATCACAATTCCTCATATCCATTTTTTCTCCATTTACGATCTCCTCCATCAAC...

CDS

Download CDS FASTA

408 bp · TkA01G542510|TK1151|CDS

ATGAAACCAAGGATTTTTGGGAGCAAGTTAAAACACTTGGCACACGTCCCCCATCTTTTGACTGAAGGAGATGGTACAAAAAGTGCCACCATAATTGGTAATGTTTATATTCACCCCTCAGCTAAAGTTCATCCCACTGTAAAGGATAAAGTTAGTTTATTGGTTATTAAATTTGCACAAATTGGTCCAAACGTGCGGTTAATCAACTGTATTATTCTTGATGATGTTAAAATCAAGCTTGGAGCGACAATTCTTGGTAG...

Protein

Download Protein FASTA

135 aa · TkA01G542510|TK1151|PROTEIN

MKPRIFGSKLKHLAHVPHLLTEGDGTKSATIIGNVYIHPSAKVHPTVKDKVSLLVIKFAQIGPNVRLINCIILDDVKIKLGATILGRIIWFYEENMGMDLRYEALNIRRFEFKSGIILYSKWCGIQVKLLMLKMK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G542510`
TK1151 ID	TkA01G542510
OH-1004 ID	LXL04_033892
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	65.600
Protein coverage (%)	TK1151 66.667 / OH-1004 91.837 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA01G542510`
Location	Chr01:136102888-136105953 (-)
Description	Similar to gmppaa: Mannose-1-phosphate guanyltransferase alpha-A
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_033892` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0009100 glycoprotein metabolic process Biological Process GO:0009101 glycoprotein biosynthetic process Biological Process GO:0009298 GDP-mannose biosynthetic process Biological Process GO:0019673 GDP-mannose metabolic process Biological Process GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0070062 extracellular exosome Cellular Component GO:0120508 GDP-mannose pyrophosphorylase complex Cellular Component GO:0004857 enzyme inhibitor activity Molecular Function GO:0005525 GTP binding Molecular Function GO:0016740 transferase activity Molecular Function GO:0016779 nucleotidyltransferase activity Molecular Function
KEGG gene cross-reference	hsa:29926 mmu:69080 panu:100137607 rno:501167 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.276

Rank 1 · TkA01G542510 · TK1151

Cytoplasm0.258

Rank 2 · TkA01G542510 · TK1151

Nucleus0.126

Rank 3 · TkA01G542510 · TK1151

Extracellular0.118

Rank 4 · TkA01G542510 · TK1151

Peroxisome0.105

Rank 5 · TkA01G542510 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25084LbH_EIF2B27-89 aa

PF00132Hexapep30-47 aa

PF25087GMPPB_C31-89 aa

PF24894Hexapep_GlmU34-84 aa

PF00132Hexapep59-78 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G542510	`PF25084`	LbH_EIF2B	27	89	0.002	18.8
TkA01G542510	`PF00132`	Hexapep	30	47	0.0045	17.3
TkA01G542510	`PF25087`	GMPPB_C	31	89	2e-09	37.9
TkA01G542510	`PF24894`	Hexapep_GlmU	34	84	0.25	12.2
TkA01G542510	`PF00132`	Hexapep	59	78	0.0045	17.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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