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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G542240
Reference: TK1151 Chr: Chr01 Coordinates: 136027136-136035558 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

6273 bp · TkA01G542240|TK1151|cDNA

CACAACTTCAAAACTCCCTGTTCATTTCCCGCCTCTTCGAATACCTATCCTTCTTCAACACTCCTCAACTATCTTTTCACTTTTTTTCACACGCTAATGGAGGATTCCGCCTCCATTACTGAATCTTCACTCCTCTCCAAGCTTCAATCGTCCTCCGATCTCTCCTCCATCCACCACCTCTTCTCTGTTTACCTCCGCCCCTTCTCCGACATCATCAATAAACCCAATAAACAGTCCAAATCTTCAAAAACTAATGAGGA...

CDS

Download CDS FASTA

6132 bp · TkA01G542240|TK1151|CDS

CACAACTTCAAAACTCCCTGTTCATTTCCCGCCTCTTCGAATACCTATCCTTCTTCAACACTCCTCAACTATCTTTTCACTTTTTTTCACACGCTAATGGAGGATTCCGCCTCCATTACTGAATCTTCACTCCTCTCCAAGCTTCAATCGTCCTCCGATCTCTCCTCCATCCACCACCTCTTCTCTGTTTACCTCCGCCCCTTCTCCGACATCATCAATAAACCCAATAAACAGTCCAAATCTTCAAAAACTAATGAGGA...

Protein

Download Protein FASTA

2043 aa · TkA01G542240|TK1151|PROTEIN

HNFKTPCSFPASSNTYPSSTLLNYLFTFFHTLMEDSASITESSLLSKLQSSSDLSSIHHLFSVYLRPFSDIINKPNKQSKSSKTNEETSTTIRSLAKKFLSFLSKALSYIPKRLNETPKIDPCYASELFEAYKLCLNCVESLLSVMTCKPHYVQVQRIRLIRCYEYWGRYEDAQKEGFLVLEFIGKLSDKRSVKLNGRVIPELGKDNCDKDIATLILEVAVTFVKCVSNGRSKDEEDYHRLLSIVDEIQPWLRVADEDVY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G542240
TK1151 IDTkA01G542240
OH-1004 IDLXL04_001375
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.800
Protein coverage (%)TK1151 98.434 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G542240
LocationChr01:136027136-136035558 (-)
DescriptionSimilar to ESP1: Separase
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g22970 Cleaves SYN1, releasing sister chromatid cohesion.
Arabidopsis separase AESP is essential for embryo development and the release of cohesin during meiosis.2006 · DOI: 10.1105/tpc.105.036913
A conditional mutation in Arabidopsis thaliana separase induces chromosome non-disjunction, aberrant morphogenesis and cyclin B1;1 stability.2010 · DOI: 10.1242/dev.041939
The radially swollen 4 separase mutation of Arabidopsis thaliana blocks chromosome disjunction and disrupts the radial microtubule system in meiocytes.2011 · DOI: 10.1371/journal.pone.0019459

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_001375 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000070 mitotic sister chromatid segregation Biological Process
GO:0000212 meiotic spindle organization Biological Process
GO:0000278 mitotic cell cycle Biological Process
GO:0000281 mitotic cytokinesis Biological Process
GO:0000911 cytokinesis by cell plate formation Biological Process
GO:0006508 proteolysis Biological Process
GO:0006887 exocytosis Biological Process
GO:0006974 DNA damage response Biological Process
GO:0007059 chromosome segregation Biological Process
GO:0007127 meiosis I Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0009826 unidimensional cell growth Biological Process
KEGG gene cross-reference
ani:ANIA_08783
ath:AT4G22970
hsa:9700
mmu:105988
spo:2539442
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.474
Rank 1 · TkA01G542240 · TK1151
Cytoplasm0.399
Rank 2 · TkA01G542240 · TK1151
Cell membrane0.091
Rank 3 · TkA01G542240 · TK1151
Mitochondrion0.072
Rank 4 · TkA01G542240 · TK1151
Endoplasmic reticulum0.069
Rank 5 · TkA01G542240 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25110TPR_ESP141-321 aa
PF03568Separin_C51-86 aa
PF25113TPR_ESP1_2nd332-450 aa
PF25113TPR_ESP1_2nd458-486 aa
PF25812RAD24_helical506-540 aa
PF25812RAD24_helical617-662 aa
PF18626Gln_deamidase_2635-665 aa
PF18626Gln_deamidase_2817-896 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G542240PF25110TPR_ESP1413212.3e-106355.6
TkA01G542240PF03568Separin_C51861.7e-91308.1
TkA01G542240PF25113TPR_ESP1_2nd3324503.6e-34119.0
TkA01G542240PF25113TPR_ESP1_2nd4584863.6e-34119.0
TkA01G542240PF25812RAD24_helical5065404.58.2
TkA01G542240PF25812RAD24_helical6176624.58.2
TkA01G542240PF18626Gln_deamidase_26356650.4611.4
TkA01G542240PF18626Gln_deamidase_28178960.4611.4
TkA01G542240PF03568Separin_C8508911.7e-91308.1
TkA01G542240PF25812RAD24_helical8578984.58.2
TkA01G542240PF25812RAD24_helical96610044.58.2
TkA01G542240PF25113TPR_ESP1_2nd96810093.6e-34119.0
TkA01G542240PF07797DUF1639126312860.3811.5
TkA01G542240PF03568Separin_C158817131.7e-91308.1
TkA01G542240PF03568Separin_C174319381.7e-91308.1
TkA01G542240PF18626Gln_deamidase_2195620040.4611.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q5IBC5Arabidopsis thalianasp|Q5IBC5|ESP1_ARATH Separase39.200%Swiss-ProtMedium

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