Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1640 bp · TkA01G539740|TK1151|cDNA
CCCCTCTCTCGACCACGAATTGCAAGATACCCAACAAACACTCTCCCCTCTTGCACCCTTCTTTTGATCTCCATACCACGTGTCACGCCTTCGATACTCTAACTTTTCCGCCATTATTTTATTTTATTTTTTTAATCAAAACTCACAAATACTCTCTCTCACACACACAAACACATAGTCACATTTTCTCTCTTCTCTCTCTGTAGCTACGGATAGAGTAAACGAGATTTTTCTTTGTGTATGCGCATCTTTCGGAGATT...
1002 bp · TkA01G539740|TK1151|CDS
ATGTCAGACTTGTCTATGTATGAGCTTGAAGATATCATTTGGGACGACTTTAATCAAGATGATGACCATATAGTACCACACCTAACAAATACTGGGACTCCTAAAAATTCATTTCAAAGAGACACCTGTAAGAAATTTGACAAAAACCTTGATAAGAAAAAGAACATGATGGAGAAGGAGTCATTCAATCCTTCATATGATGTTGAGATAGTAAAAGACACATGTGAGGACACTAGAATGCCAGATAAGTGCTTCAAAAA...
Protein
Download Protein FASTA333 aa · TkA01G539740|TK1151|PROTEIN
MSDLSMYELEDIIWDDFNQDDDHIVPHLTNTGTPKNSFQRDTCKKFDKNLDKKKNMMEKESFNPSYDVEIVKDTCEDTRMPDKCFKKSYATSAQGDDNSYSYPLTHISQSEDLYYGWPDIGTFEDVDNMLRSCDSSFGLENDEWFTNDQIGGGLNNNILPEGYLMDSCGDLSFEGGTVSENDDKKQGFKPLFVGSPKQKGMSLEIGSLNVPETSSISSELDEISLEATSFRHLQQIMEQLDLRTKLCIRDSLYRLARSAE...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA01G539740 |
|---|---|
| TK1151 ID | TkA01G539740 |
| OH-1004 ID | LXL04_034332 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 47.700 |
| Protein coverage (%) | TK1151 25.826 / OH-1004 19.899Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA01G539740 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:135353061-135355802 (+) | |||||||||
| Description | Similar to LNK2: Protein LNK2 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006351 DNA-templated transcription Biological Process GO:0006354 DNA-templated transcription elongation Biological Process GO:0006355 regulation of DNA-templated transcription Biological Process GO:0009649 entrainment of circadian clock Biological Process GO:0032922 circadian regulation of gene expression Biological Process GO:0005634 nucleus Cellular Component GO:0003712 transcription coregulator activity Molecular Function GO:0070063 RNA polymerase binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT3G54500 ath:AT5G64170 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF30476LNK41-60 aaPF30476LNK232-310 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA01G539740 | PF30476 | LNK | 41 | 60 | 8.2e-33 | 113.6 |
| TkA01G539740 | PF30476 | LNK | 232 | 310 | 8.2e-33 | 113.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.