Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1652 bp · TkA01G539490|TK1151|cDNA
CAACCATGAGGAGTCAACTTGGAAAGAATCAAAGGGGGGCAGAGGAGCGTTTGATAAAATAAAGAAACCCGATCAAACTGTTTCGGATTCTTCACGCTTTCTCTTTGAAATGTCCGTTTTCTAATATAAACCCTAACCGATTGCAAATGAAATCTGTTTTCCTGCGGGTTTCTATGTTATCTCAAGAACCCTAGCCAATACCATTTCAATCAATCACAAAATTCTCTACAATTCCCATATTTTCGCCAAAATTTTCTAGG...
741 bp · TkA01G539490|TK1151|CDS
ATGGGGGCAGCGGGGTCTAAGCTCGAGAAAGCTCTAGGAGACCAATTTCCTGAAGGCGAACGATATTTCGGACTTGAAAACTTCGGTAACACTTGCTACTGTAACAGCGTCCTGCAGGCTCTATATTTTTGTGTTCCATTTCGTGAACAACTACTTGAATACTATGAAAAGGTTAAAAATCCAGATGTTGAAGAAAACCTCTTAACATGTTTAGCGGAACTGTTTACACAGATTAGCACACAAAAGAAGAAAACAGGTGT...
Protein
Download Protein FASTA246 aa · TkA01G539490|TK1151|PROTEIN
MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYEKVKNPDVEENLLTCLAELFTQISTQKKKTGVIAPKRFVQRVKKENELFRGYMHQDAHEFLNFLLNELVDILEKETKGSKEHSPPEKIPNGIHAPQSNGVRKEPLVTWVHKNFQGILTNETKCLRCETVTARDETFLDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKQHIF
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA01G539490 |
|---|---|
| TK1151 ID | TkA01G539490 |
| OH-1004 ID | LXL04_023287 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 69.500 |
| Protein coverage (%) | TK1151 93.089 / OH-1004 89.455Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA01G539490 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:135267653-135271325 (+) | |||||||||
| Description | Similar to UBP4: Ubiquitin carboxyl-terminal hydrolase 4 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006508 proteolysis Biological Process GO:0016579 protein deubiquitination Biological Process GO:0031647 regulation of protein stability Biological Process GO:0050862 positive regulation of T cell receptor signaling pathway Biological Process GO:0060013 righting reflex Biological Process GO:0090263 positive regulation of canonical Wnt signaling pathway Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0005886 plasma membrane Cellular Component GO:1905368 peptidase complex Cellular Component GO:0004197 cysteine-type endopeptidase activity Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT2G22310 ath:AT4G39910 mmu:22217 pon:100189895 rno:289584 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00443UCH23-205 aaPF13423UCH_124-241 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA01G539490 | PF00443 | UCH | 23 | 205 | 7.7e-33 | 114.9 |
| TkA01G539490 | PF13423 | UCH_1 | 24 | 241 | 3.1e-12 | 47.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.