RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G539130
Reference: TK1151 Chr: Chr01 Coordinates: 135177559-135180729 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1797 bp · TkA01G539130|TK1151|cDNA

TTTTTCTGTTAAAAGAAGCTGTTTAGAATGGGAATTTTCTAAGCAAATCGCTTCTCTCTCTACTACTATTTATCTTTCGGTATTCAGGATCCAAAATGGAATATTCTTTTTGTTCCAATTAAATGTATATCGTAGGTGTATGCTTGTCCATTTATCAACAAGATGCCTCAATTTTTCACTAAAATGCAACATGAACGGATAGACTTACGATTTCTTATTTCTTAAGAGTTTAGCAGACAACATATCTAATGGCAATCGTA...

CDS

Download CDS FASTA

1332 bp · TkA01G539130|TK1151|CDS

ATGGCAATCGTACCTGGTGGGAGTACATGGGTGGCTAGGTGGGGAGTTCAACCTCAAGTAATGTCCAGAGCTTCTTCAGCAAGCAGCAAGTCTTTCATGCATTTGCCTCATTTCTCAATAAATACAAGAGAGTTGGCATCACCATGTTCTGCCTTCTGTTCAAAAGGCTCTTTGCATGCACTATACAATATGGCTTCATTTGGTAAATCTCACCACAAAAGAGGTGCTCGCCTTATTGTTAAAGCCGAAAGTGATTTTTA...

Protein

Download Protein FASTA

443 aa · TkA01G539130|TK1151|PROTEIN

MAIVPGGSTWVARWGVQPQVMSRASSASSKSFMHLPHFSINTRELASPCSAFCSKGSLHALYNMASFGKSHHKRGARLIVKAESDFYSVLGVSKNSSKAEIKSAYRKLARSYHPDVNKEPGAEQKFKDISNAYEVLSDDEKRSIYDRYGEAGLKGAGVGTGDFSNPFDLFESLFDGLGGMGGGMGGGRNTRNRATQGEDQGYNLVLNFKEAIFGIEKEIEVTRLESCQTCNGSGAKPGTTPSKCTTCGGQGQVISSARTP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G539130
TK1151 IDTkA01G539130
OH-1004 IDLXL04_001422
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.500
Protein coverage (%)TK1151 100.000 / OH-1004 90.224
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G539130
LocationChr01:135177559-135180729 (-)
DescriptionSimilar to DJA6: Chaperone protein dnaJ A6, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g22360 May function together with HSC70 chaperone to assist protein folding and prevent protein aggregation during heat stress in the chloroplast. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os05g0333500 Plays pivotal roles in chloroplast development. No verified direct reference in this release
Os05g0334000 Plays pivotal roles in chloroplast development. No verified direct reference in this release
Os05g0334400 Plays pivotal roles in chloroplast development. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_001422 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006260 DNA replication Biological Process
GO:0006457 protein folding Biological Process
GO:0009408 response to heat Biological Process
GO:0042026 protein refolding Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005773 vacuole Cellular Component
GO:0005783 endoplasmic reticulum Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009535 chloroplast thylakoid membrane Cellular Component
GO:0009941 chloroplast envelope Cellular Component
GO:0005506 iron ion binding Molecular Function
GO:0005524 ATP binding Molecular Function
KEGG gene cross-reference
ath:AT2G22360
dosa:Os05g0333500
dosa:Os05g0334400
osa:107275576
osa:4338449
osa:4338452
tel:tll0790
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.966
Rank 1 · TkA01G539130 · TK1151
Mitochondrion0.051
Rank 2 · TkA01G539130 · TK1151
Cytoplasm0.018
Rank 3 · TkA01G539130 · TK1151
Nucleus0.013
Rank 4 · TkA01G539130 · TK1151
Peroxisome0.012
Rank 5 · TkA01G539130 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF15777Anti-TRAP40-51 aa
PF00226DnaJ85-146 aa
PF30912TIM141_C88-137 aa
PF01556DnaJ_C202-417 aa
PF30758Orange_C214-255 aa
PF15777Anti-TRAP225-254 aa
PF27659CHP02642225-256 aa
PF23733GRXCR1-2_C225-233 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G539130PF15777Anti-TRAP40510.001619.1
TkA01G539130PF00226DnaJ851461.7e-2796.0
TkA01G539130PF30912TIM141_C881370.03215.0
TkA01G539130PF01556DnaJ_C2024173.6e-45154.5
TkA01G539130PF30758Orange_C2142553.68.7
TkA01G539130PF15777Anti-TRAP2252540.001619.1
TkA01G539130PF27659CHP026422252560.02514.8
TkA01G539130PF23733GRXCR1-2_C2252330.2611.9
TkA01G539130PF17302DUF53512252350.9910.5
TkA01G539130PF25112zf-AtTam372262540.06914.6
TkA01G539130PF23733GRXCR1-2_C2262510.2611.9
TkA01G539130PF00684DnaJ_CXXCXGXG2272901.5e-1557.9
TkA01G539130PF20833RNase_E_G_Thio2272350.1413.1
TkA01G539130PF30758Orange_C2272913.68.7
TkA01G539130PF25433DUF78952432536.57.9
TkA01G539130PF20833RNase_E_G_Thio2442740.1413.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SJZ7Arabidopsis thalianasp|Q9SJZ7|DNJA6_ARATH Chaperone protein dnaJ A6, chloroplastic69.900%Swiss-ProtHigh
P0DO01Oryza sativa subsp. japonicasp|P0DO01|DJA7A_ORYSJ Chaperone protein dnaJ A7A, chloroplastic68.400%Swiss-ProtHigh
P0DO02Oryza sativa subsp. japonicasp|P0DO02|DJA7B_ORYSJ Chaperone protein dnaJ A7B, chloroplastic68.400%Swiss-ProtHigh
P0DO03Oryza sativa subsp. japonicasp|P0DO03|DJA8_ORYSJ Chaperone protein dnaJ A8, chloroplastic68.400%Swiss-ProtHigh

JBrowse

View in Genome Browser