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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G534990
Reference: TK1151 Chr: Chr01 Coordinates: 134257216-134260604 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1862 bp · TkA01G534990|TK1151|cDNA

TTCAAAACTTGCAAGGAACATAAAACTTCGTTAATCTTTGCACTCCATCAATTGCTTAAAAGTCACCAAAACCTAAAAAACAAATCCTCCCATGAATCATCATTCTCATCCAGATCTATCGCCTGTTAATTTGTATCTTAAAAACATCTTTTCTATACTCTTATGTGTTCCATTCTAAATTTGCAATTTTCATCTTTACGAAATAATTTCATACCCCTTTCAAAACCCTTTTAGGACTTGACTTGACCGCCATGAATCCA...

CDS

Download CDS FASTA

1611 bp · TkA01G534990|TK1151|CDS

ATGAATCCAAGAAGCTCTTCAGCATCTTATAATGGGGTCCGTAGCTTTGCCACCTTGCTGATAAGCCGCTATAAATTTAGTCCAAGTACCACAACTCGTCTTCCATCCCACCATGACATGAGGCTTTCCAAGTTTGGATATGGCATAGGCAGCTCAATGCACCAATCACTAAGCATTTCCAGTGGCAATTCGATGAAAATGCCAAAGTCTAAAATGGAACAGGAAGATGGCTTAAAGGCTGTGCCCTCTGATCCAGCTCC...

Protein

Download Protein FASTA

536 aa · TkA01G534990|TK1151|PROTEIN

MNPRSSSASYNGVRSFATLLISRYKFSPSTTTRLPSHHDMRLSKFGYGIGSSMHQSLSISSGNSMKMPKSKMEQEDGLKAVPSDPAPPRRNIFYWVKWVLGSILPFLFSSWKKKWDNMLKLEDKLDEIVKEGEELAEVVEKVASTTEKLSAEVAEHLNNGELKEIALKVEHVSSVALKEAQMTEKFLHKVGDLEQDLKKLENMVEPVIDKIEHKKFKLSLLDQLASSSSIHLIFYYKAGDDLNISDKRTQLVKSLSEALT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G534990
TK1151 IDTkA01G534990
OH-1004 IDLXL04_001442
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)83.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G534990
LocationChr01:134257216-134260604 (+)
DescriptionSimilar to ACT: Vinorine synthase
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_001442 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0035835 indole alkaloid biosynthetic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0016746 acyltransferase activity Molecular Function
KEGG gene cross-reference
ag:AGT56097
ag:URS65387
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.792
Rank 1 · TkA01G534990 · TK1151
Mitochondrion0.122
Rank 2 · TkA01G534990 · TK1151
Cytoplasm0.093
Rank 3 · TkA01G534990 · TK1151
Endoplasmic reticulum0.066
Rank 4 · TkA01G534990 · TK1151
Nucleus0.061
Rank 5 · TkA01G534990 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10046BLOC1_2112-153 aa
PF00170bZIP_1112-152 aa
PF10146zf-C4H2112-206 aa
PF25450Rab11-FIP3113-159 aa
PF29876VAB2115-153 aa
PF05377FlaC_arch118-149 aa
PF15191Synaptonemal_3122-152 aa
PF06103DUF948130-177 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G534990PF10046BLOC1_21121530.2612.4
TkA01G534990PF00170bZIP_11121522.49.0
TkA01G534990PF10146zf-C4H21122063.88.7
TkA01G534990PF25450Rab11-FIP31131594.38.4
TkA01G534990PF29876VAB21151530.07313.7
TkA01G534990PF05377FlaC_arch1181493.28.9
TkA01G534990PF15191Synaptonemal_31221522.38.9
TkA01G534990PF06103DUF9481301773.48.6
TkA01G534990PF23353BBS2_hp1311970.3711.6
TkA01G534990PF10046BLOC1_21632050.2612.4
TkA01G534990PF15191Synaptonemal_31762082.38.9
TkA01G534990PF29876VAB21792300.07313.7
TkA01G534990PF25450Rab11-FIP31822234.38.4
TkA01G534990PF06103DUF9481832113.48.6
TkA01G534990PF05377FlaC_arch1892123.28.9
TkA01G534990PF00170bZIP_11922052.49.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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