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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G534330
Reference: TK1151 Chr: Chr01 Coordinates: 134097848-134101557 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

774 bp · TkA01G534330|TK1151|cDNA

TGTACAAGTCTCCTCCTCCACCCGTCCATTCACCACCACCACTATACATGTACAAATCTCCTCCTCCTCCGGTGCATTCACCACCACCACCATATGAGTACAAGTCTCCACCTCCACCGGTGCATTCACCACCACCACCATATATGTACAAGTCTCCTCCTCCACCAGCCCATTCACCACCACCACCATATATGTACAAATCTCCTCCTCCTCCGGTGCATTCACCACCACCACCATATGAGTACAACTCTCCACCTCCA...

CDS

Download CDS FASTA

1488 bp · TkA01G534330|TK1151|CDS

ATGGCACCAAATGGTACCAAATGCAACATTCCAACAAATCTCCATGGGGGTTTAAAGGGTGCCGAGCTTAAAGTCAAGTCCAAAAATGCTTATGTGGTTGTCCTACAAGCTAAGCCATTTGCATATGCTCCTAAGACTCCTTCTACGATTTGTGAGAAACCAAAGCCAAAACCAGAGCCAACTCATCCCGTGTATTACTACAAATCACCACCACCACCGCCAACTTACTTGTACAAGTCTCCTCCAGTGTACCATTACAC...

Protein

Download Protein FASTA

495 aa · TkA01G534330|TK1151|PROTEIN

MAPNGTKCNIPTNLHGGLKGAELKVKSKNAYVVVLQAKPFAYAPKTPSTICEKPKPKPEPTHPVYYYKSPPPPPTYLYKSPPVYHYTSPPPPTKSSPPPYHYTSPPPPVKSPPPPYHKTSPPPPVKSPPIYHYTSPPPPKKSPPPPYHYTSPPPPKKSPPPPYHYTSPPPPVKSPPPPYHYTSPPPPVKSPPPPYHYSSPPPPVKSPPPPYHYTSPPPPMKSPPPPYHYTSPPPPVKSPSPPYHYTSRPPPVKSPPPPYH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G534330
TK1151 IDTkA01G534330
OH-1004 IDLXL04_001449
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 13.535 / OH-1004 7.150
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G534330
LocationChr01:134097848-134101557 (+)
DescriptionSimilar to EXT3: Extensin-3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_001449 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009664 plant-type cell wall organization Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0009530 primary cell wall Cellular Component
GO:0016324 apical plasma membrane Cellular Component
GO:0005199 structural constituent of cell wall Molecular Function
KEGG gene cross-reference
ath:AT1G21310
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.931
Rank 1 · TkA01G534330 · TK1151
Endoplasmic reticulum0.030
Rank 2 · TkA01G534330 · TK1151
Cytoplasm0.028
Rank 3 · TkA01G534330 · TK1151
Cell membrane0.026
Rank 4 · TkA01G534330 · TK1151
Nucleus0.009
Rank 5 · TkA01G534330 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04554Extensin_253-108 aa
PF04554Extensin_2100-155 aa
PF04554Extensin_2157-187 aa
PF04554Extensin_2189-219 aa
PF04554Extensin_2221-251 aa
PF04554Extensin_2244-299 aa
PF04554Extensin_2301-331 aa
PF04554Extensin_2323-379 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G534330PF04554Extensin_2531085.1e-39132.9
TkA01G534330PF04554Extensin_21001555.1e-39132.9
TkA01G534330PF04554Extensin_21571875.1e-39132.9
TkA01G534330PF04554Extensin_21892195.1e-39132.9
TkA01G534330PF04554Extensin_22212515.1e-39132.9
TkA01G534330PF04554Extensin_22442995.1e-39132.9
TkA01G534330PF04554Extensin_23013315.1e-39132.9
TkA01G534330PF04554Extensin_23233795.1e-39132.9
TkA01G534330PF04554Extensin_23653955.1e-39132.9
TkA01G534330PF04554Extensin_23964275.1e-39132.9
TkA01G534330PF04554Extensin_24294595.1e-39132.9
TkA01G534330PF04554Extensin_24354925.1e-39132.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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