Gene Card
Gene overview
cDNA / CDS / Protein Sequences
360 bp · TkA01G532860|TK1151|cDNA
ATGGATAAGGCTTCTATTCTTGGAGATGCAATTGAGTATACGAAGATCCTCCAAGAGAAAGTGAAGAATCTTGAGGAACATGCCCAGAAGATAGCAAACATAAAACCAGTAAGATTCGAGGTGGTGGTTGATGGTGGTTCATCGACTGAGAAATATTCCGGTGTAGCGGAACAACTCCCGGAGATTGAAGCAAGATTTTCCGGCAGTAATGTTCTTATAAGAGTCCATTGTGAGAAAAAAACAGGTGTTGTAGAAAATAC...
360 bp · TkA01G532860|TK1151|CDS
ATGGATAAGGCTTCTATTCTTGGAGATGCAATTGAGTATACGAAGATCCTCCAAGAGAAAGTGAAGAATCTTGAGGAACATGCCCAGAAGATAGCAAACATAAAACCAGTAAGATTCGAGGTGGTGGTTGATGGTGGTTCATCGACTGAGAAATATTCCGGTGTAGCGGAACAACTCCCGGAGATTGAAGCAAGATTTTCCGGCAGTAATGTTCTTATAAGAGTCCATTGTGAGAAAAAAACAGGTGTTGTAGAAAATAC...
Protein
Download Protein FASTA119 aa · TkA01G532860|TK1151|PROTEIN
MDKASILGDAIEYTKILQEKVKNLEEHAQKIANIKPVRFEVVVDGGSSTEKYSGVAEQLPEIEARFSGSNVLIRVHCEKKTGVVENTLAEREASRICGQQYCHDLWEFGYSYYCYWSDG
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA01G532860 |
|---|---|
| TK1151 ID | TkA01G532860 |
| OH-1004 ID | LXL04_017259 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 57.000 |
| Protein coverage (%) | TK1151 77.311 / OH-1004 31.153Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA01G532860 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:133761742-133762174 (+) | |||||||||
| Description | Similar to BHLH25: Transcription factor bHLH25 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006351 DNA-templated transcription Biological Process GO:0006355 regulation of DNA-templated transcription Biological Process GO:0007029 endoplasmic reticulum organization Biological Process GO:0005634 nucleus Cellular Component GO:0000976 transcription cis-regulatory region binding Molecular Function GO:0003677 DNA binding Molecular Function GO:0003700 DNA-binding transcription factor activity Molecular Function GO:0043565 sequence-specific DNA binding Molecular Function GO:0046983 protein dimerization activity Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT2G22750 ath:AT2G22760 ath:AT2G22770 ath:AT4G37850 ath:AT5G57150 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF23177bHLH_IRO31-35 aaPF23182PABC_AtC3H469-32 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA01G532860 | PF23177 | bHLH_IRO3 | 1 | 35 | 0.015 | 16.3 |
| TkA01G532860 | PF23182 | PABC_AtC3H46 | 9 | 32 | 0.27 | 12.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.