TkA01G532370 | RubberDandelionOmics

Gene overview

TkA01G532370

Reference: TK1151 Chr: Chr01 Coordinates: 133631144-133649497 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1151 bp · TkA01G532370|TK1151|cDNA

CTTGAATAGAACACCTATATCTCTCACCCAAATAAGAACTCCTTCTCCCCTACGGATCTTCATTACGGCAAATAAGCTCAAATTAGTCAAGAGCAGGTTGCTGAAACCCTAATGGGGAGAGGGAAGATTGTAATTCGAAGGATCGATAACTCAACCAGCAGGCAAGTTACTTTTTCTAAAAGAAGAAATGGGTTGTTGAAGAAGGCGAAGGAGTTGGCTATTTTGTGCGATGCTGAAGTCGGACTCATTGTCTTCTCTAG...

CDS

Download CDS FASTA

561 bp · TkA01G532370|TK1151|CDS

ATGGGGAGAGGGAAGATTGTAATTCGAAGGATCGATAACTCAACCAGCAGGCAAGTTACTTTTTCTAAAAGAAGAAATGGGTTGTTGAAGAAGGCGAAGGAGTTGGCTATTTTGTGCGATGCTGAAGTCGGACTCATTGTCTTCTCTAGCACTGGGAAGCTCCACGAGTTCGCTAGCTCAAGCATGAAAACAGTTACTGAGCGGTACACCAAAGTGAAGGAGGAACATCATCAACTGATGAATACTTCTTCAGAAGCCAA...

Protein

Download Protein FASTA

186 aa · TkA01G532370|TK1151|PROTEIN

MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGLIVFSSTGKLHEFASSSMKTVTERYTKVKEEHHQLMNTSSEAKEQIQNKEIQEKEATTIWNVLGSRSSSTEATTSLFATKPQAVIGRRAFWFRCQSSSSQLETQLEMSLKGVRVKKDQALTDEINELHTRGVLLFMKIKNCT

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G532370`
TK1151 ID	TkA01G532370
OH-1004 ID	LXL04_001480
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	97.800
Protein coverage (%)	TK1151 47.849 / OH-1004 13.404 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G532370

Location Chr01:133631144-133649497 (+)

Description Similar to PME26: Putative pectinesterase/pectinesterase inhibitor 26

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g37940`	Probable transcription factor.	No verified direct reference in this release
`At2g14210`	Probable transcription factor.	Nitrate and glutamate sensing by plant roots.2005 · DOI: 10.1042/bst0330283 The Arabidopsis NRT1.1 transporter participates in the signaling pathway triggering root colonization of nitrate-rich patches.2006 · DOI: 10.1073/pnas.0605275103 An Arabidopsis MADS box gene that controls nutrient-induced changes in root architecture.1998 · DOI: 10.1126/science.279.5349.407

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0579600`	Probable transcription factor.	No verified direct reference in this release
`Os02g0731200`	Transcriptional factor that targets the CArG motif 5'-C(A/T)TTAAAAAG-3' in the promoter of D14.	The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14.2013 · DOI: 10.1038/ncomms2542
`Os08g0431900`	Probable transcription factor.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001480 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0042545 cell wall modification Biological Process

GO:0045490 pectin catabolic process Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005768 endosome Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005802 trans-Golgi network Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

KEGG gene cross-reference

ath:AT1G53840

ath:AT3G14300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.959

Rank 1 · TkA01G532370 · TK1151

Cytoplasm0.105

Rank 2 · TkA01G532370 · TK1151

Cell membrane0.021

Rank 3 · TkA01G532370 · TK1151

Mitochondrion0.012

Rank 4 · TkA01G532370 · TK1151

Endoplasmic reticulum0.012

Rank 5 · TkA01G532370 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00319SRF-TF10-57 aa

PF01637ATPase_245-110 aa

PF20639Rrn6_K-rich68-157 aa

PF01486K-box70-82 aa

PF25486DUF790972-153 aa

PF01486K-box144-174 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G532370	`PF00319`	SRF-TF	10	57	3.6e-26	91.1
TkA01G532370	`PF01637`	ATPase_2	45	110	0.03	14.9
TkA01G532370	`PF20639`	Rrn6_K-rich	68	157	0.051	15.1
TkA01G532370	`PF01486`	K-box	70	82	1.9e-06	28.7
TkA01G532370	`PF25486`	DUF7909	72	153	0.0047	17.2
TkA01G532370	`PF01486`	K-box	144	174	1.9e-06	28.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SZJ6`	Arabidopsis thaliana	sp\|Q9SZJ6\|AGL21_ARATH Agamous-like MADS-box protein AGL21	52.000%	Swiss-Prot	High
`Q9SI38`	Arabidopsis thaliana	sp\|Q9SI38\|ANR1_ARATH MADS-box transcription factor ANR1	53.700%	Swiss-Prot	High
`Q6EP49`	Oryza sativa subsp. japonica	sp\|Q6EP49\|MAD27_ORYSJ MADS-box transcription factor 27	49.200%	Swiss-Prot	Medium
`Q6Z6W2`	Oryza sativa subsp. japonica	sp\|Q6Z6W2\|MAD57_ORYSJ MADS-box transcription factor 57	50.300%	Swiss-Prot	High
`Q6VAM4`	Oryza sativa subsp. japonica	sp\|Q6VAM4\|MAD23_ORYSJ MADS-box transcription factor 23	48.300%	Swiss-Prot	Medium

JBrowse

View in Genome Browser

Gene Card