TkA01G530280 | RubberDandelionOmics

Gene overview

TkA01G530280

Reference: TK1151 Chr: Chr01 Coordinates: 133084642-133085449 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

732 bp · TkA01G530280|TK1151|cDNA

CTTCATTGTTGATTGCAGGTTTTTTCGAAGATTTTTTTGCAGAATGTTTAAAATATTTTGTTGTGTCAATATGTGATGTTTTTTTATCGTAGTGCGGTTCTGGCTTTTAAAGTGGGTGATCAAGTGGAGGTTGTTGGAAGCGATGGTGTTTTTAAGCATGCTTTCTACACTGCCAATGTTCGATCTGTGTTGGCTGACGGTTTTGAGGTGCAGTATCACACAAGGATGACAGACGATGGAGAGCAAAAGGCGGAGATTGT...

CDS

Download CDS FASTA

657 bp · TkA01G530280|TK1151|CDS

ATGTTTTTTTATCGTAGTGCGGTTCTGGCTTTTAAAGTGGGTGATCAAGTGGAGGTTGTTGGAAGCGATGGTGTTTTTAAGCATGCTTTCTACACTGCCAATGTTCGATCTGTGTTGGCTGACGGTTTTGAGGTGCAGTATCACACAAGGATGACAGACGATGGAGAGCAAAAGGCGGAGATTGTAGCTGCTAAGCAAATACGACCCATTCCGGATGTTATTGTTGCTGATGTCAAAGAGCGTGACTTTGTGGAAGTTTG...

Protein

Download Protein FASTA

219 aa · TkA01G530280|TK1151|PROTEIN

MFFYRSAVLAFKVGDQVEVVGSDGVFKHAFYTANVRSVLADGFEVQYHTRMTDDGEQKAEIVAAKQIRPIPDVIVADVKERDFVEVWMDDGWWRGVVVAVIESYAVVFFAYKTVGEQNFVFPKTQLRIPQKWHQDGDSVFWMYRKRLADKNIRVGEDVEVVGTEELFNFSMYRARVHMVFGDSVQVEYCNRVTAAGAALVETVASDQVRYIPDVIVGNL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G530280`
TK1151 ID	TkA01G530280
OH-1004 ID	LXL04_016614
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	81.100
Protein coverage (%)	TK1151 55.708 / OH-1004 91.729 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA01G530280`
Location	Chr01:133084642-133085449 (-)
Description	Similar to AGDP1: Protein AGENET DOMAIN (AGD)-CONTAINING P1
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_016614` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006346 DNA methylation-dependent constitutive heterochromatin formation Biological Process GO:0000775 chromosome, centromeric region Cellular Component GO:0000792 heterochromatin Cellular Component GO:0005634 nucleus Cellular Component GO:0042393 histone binding Molecular Function GO:0140566 histone reader activity Molecular Function
KEGG gene cross-reference	ath:AT1G09320 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.578

Rank 1 · TkA01G530280 · TK1151

Nucleus0.509

Rank 2 · TkA01G530280 · TK1151

Endoplasmic reticulum0.046

Rank 3 · TkA01G530280 · TK1151

Cell membrane0.037

Rank 4 · TkA01G530280 · TK1151

Mitochondrion0.037

Rank 5 · TkA01G530280 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05641Agenet14-71 aa

PF18336Tudor_FRX116-47 aa

PF18336Tudor_FRX174-90 aa

PF05641Agenet82-127 aa

PF18336Tudor_FRX184-125 aa

PF05641Agenet155-212 aa

PF18336Tudor_FRX1158-190 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G530280	`PF05641`	Agenet	14	71	3e-19	70.0
TkA01G530280	`PF18336`	Tudor_FRX1	16	47	0.17	12.5
TkA01G530280	`PF18336`	Tudor_FRX1	74	90	0.17	12.5
TkA01G530280	`PF05641`	Agenet	82	127	3e-19	70.0
TkA01G530280	`PF18336`	Tudor_FRX1	84	125	0.17	12.5
TkA01G530280	`PF05641`	Agenet	155	212	3e-19	70.0
TkA01G530280	`PF18336`	Tudor_FRX1	158	190	0.17	12.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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