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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G522920
Reference: TK1151 Chr: Chr01 Coordinates: 131219647-131222442 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1647 bp · TkA01G522920|TK1151|cDNA

CTGAAATAAACTAAGGTGGTGAGATGTTGCCCATCAATACATTATTCTATAACCCTAAACAAGTTTCAATCGCTTTGATATCCAACTTCATTACCTCTGAGCAAAATATGGTCCATAAAGCATCGATTCCATGGAAAATATCGACTGCTGTTAACCATGAAGCCGGAATTTCTGTAAAAGTAAATGAAGAAGAGAATCTTCCATATGATAAAAATGCAGCTTTAGAGGAAACCGTGAAAAACCTCCATGAACAGGTAGCT...

CDS

Download CDS FASTA

1410 bp · TkA01G522920|TK1151|CDS

ATGTTGCCCATCAATACATTATTCTATAACCCTAAACAAGTTTCAATCGCTTTGATATCCAACTTCATTACCTCTGAGCAAAATATGGTCCATAAAGCATCGATTCCATGGAAAATATCGACTGCTGTTAACCATGAAGCCGGAATTTCTGTAAAAGTAAATGAAGAAGAGAATCTTCCATATGATAAAAATGCAGCTTTAGAGGAAACCGTGAAAAACCTCCATGAACAGGTAGCTTGTCTTCTATGTGAGTGTAATGC...

Protein

Download Protein FASTA

469 aa · TkA01G522920|TK1151|PROTEIN

MLPINTLFYNPKQVSIALISNFITSEQNMVHKASIPWKISTAVNHEAGISVKVNEEENLPYDKNAALEETVKNLHEQVACLLCECNAKDELMAEHMKTTQEAIAEREKAEAEVAIWKQELEDTLQHNVSAYERLVDLNASLKNCKTQLNSLKLEQNQWVNLEKSHKKLESKYTETRKKLANLTLENALLTKALVKKQEDHVSNQISKPRNADMANWQHQESAKLEAEKQRLRLLVKKRVPVQSMGLMMKKISEMEEENGS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G522920
TK1151 IDTkA01G522920
OH-1004 IDLXL04_001599
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.600
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G522920
LocationChr01:131219647-131222442 (-)
DescriptionSimilar to FPP2: Filament-like plant protein 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g21810 Ensures, when in complex with FPP3/VETH1 and COG2, the correct secondary cell wall (SCW) deposition pattern by recruiting exocyst components to cortical microtubules in xylem cells during secondary cell wall deposition by recruiting EXO70A1. No verified direct reference in this release
At1g77580 Filament-like plant protein 1. No verified direct reference in this release
At1g19835 Filament-like plant protein 4. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_001599 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0010090 trichome morphogenesis Biological Process
GO:0046785 microtubule polymerization Biological Process
GO:0060178 regulation of exocyst localization Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0031410 cytoplasmic vesicle Cellular Component
GO:0008017 microtubule binding Molecular Function
GO:0030674 protein-macromolecule adaptor activity Molecular Function
KEGG gene cross-reference
ath:AT1G19835
ath:AT1G21810
ath:AT1G77580
ath:AT4G36120
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.465
Rank 1 · TkA01G522920 · TK1151
Nucleus0.327
Rank 2 · TkA01G522920 · TK1151
Cell membrane0.278
Rank 3 · TkA01G522920 · TK1151
Endoplasmic reticulum0.061
Rank 4 · TkA01G522920 · TK1151
Golgi apparatus0.047
Rank 5 · TkA01G522920 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16888YwqH-like54-78 aa
PF06785UPF024254-128 aa
PF13847Methyltransf_3158-125 aa
PF09868DUF209559-113 aa
PF08614ATG1662-193 aa
PF28907ZapB_rel63-81 aa
PF30677CCDC18_1st63-95 aa
PF16888YwqH-like65-125 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G522920PF16888YwqH-like54780.07114.1
TkA01G522920PF06785UPF0242541280.1313.0
TkA01G522920PF13847Methyltransf_31581250.03214.7
TkA01G522920PF09868DUF2095591132.78.5
TkA01G522920PF08614ATG16621930.3211.9
TkA01G522920PF28907ZapB_rel63810.006517.8
TkA01G522920PF30677CCDC18_1st63951.98.4
TkA01G522920PF16888YwqH-like651250.07114.1
TkA01G522920PF05911FPP881984e-35122.1
TkA01G522920PF30677CCDC18_1st932021.98.4
TkA01G522920PF23649FKBP15931962.68.3
TkA01G522920PF16888YwqH-like1201740.07114.1
TkA01G522920PF28907ZapB_rel1371730.006517.8
TkA01G522920PF24237INO80E1451689.97.3
TkA01G522920PF06785UPF02421492290.1313.0
TkA01G522920PF08614ATG161623390.3211.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SFF4Arabidopsis thalianasp|Q9SFF4|FPP2_ARATH Filament-like plant protein 232.300%Swiss-ProtLow
Q9CAP9Arabidopsis thalianasp|Q9CAP9|FPP1_ARATH Filament-like plant protein 131.600%Swiss-ProtLow
Q0WSY2Arabidopsis thalianasp|Q0WSY2|FPP4_ARATH Filament-like plant protein 427.000%Swiss-ProtLow

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