Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1767 bp · TkA01G521820|TK1151|cDNA
CCGGACCACACATAAGTCTCTACCATCCTACCATTCAATTACATGATCAGAGATGAATAAAAGGAAAATTAAACATTTTGTTCATCTCTTTCCAACTTATTTTAAATCAAAAGAAAGTGGTTAATTGTTAACTATACATTTATAAATCGGTTAGTTTAGTCGATGCAAGTATGTAACCAACATCACCTCACCACATGCACGATTGATGCAATTTCCTCGTGACAAAAGTTGCCAACGTGTTTGTAATTTACTCTGAAAAT...
1158 bp · TkA01G521820|TK1151|CDS
ATGCCATTAATAACAGATGTAATCGAAGCTGTGCGTTTTGCTTGCACCTTATCTTTTTGGAGAATGAGCATTCACTGGACATACGCGCTTGTACTTTCCTACATACATCTGTTCATTCAAGCCACGTTTTCCCAGAAATCCGTATACCACCATTCCGTTGTTTCACCTTTACCTCCATTAACACCTTCCAAGACATCTAACAAACATCTACCAATCTGCATCATCACCGGTGCATCATCTGGGTTAGGTGCAGCAGCAGC...
Protein
Download Protein FASTA385 aa · TkA01G521820|TK1151|PROTEIN
MPLITDVIEAVRFACTLSFWRMSIHWTYALVLSYIHLFIQATFSQKSVYHHSVVSPLPPLTPSKTSNKHLPICIITGASSGLGAAAAHVLSKKGFHVVLVGRSLHKLSKVMSDIKCGNEQVQLKAFEVDLSNFSSIMKFKESLEQWLLESDMHPSIQLLINNAGMLAITSRLTTQGHDLMMGTNYIGPFCLTQVLLPFLKNSPIPSRIVNVTSFTHRIVSSFRADKETVSGNFYSKYKQYPCAEIYEYSKLCMLLLSYEL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA01G521820 |
|---|---|
| TK1151 ID | TkA01G521820 |
| OH-1004 ID | LXL04_001617 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.700 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 98.465Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA01G521820 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:130893668-130896367 (-) | |||||||||
| Description | Similar to DHRSX: Dehydrogenase/reductase SDR family member on chromosome X | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0001523 retinoid metabolic process Biological Process GO:0010508 positive regulation of autophagy Biological Process GO:0015031 protein transport Biological Process GO:0042572 retinol metabolic process Biological Process GO:0042574 retinal metabolic process Biological Process GO:0043048 dolichyl monophosphate biosynthetic process Biological Process GO:0110095 cellular detoxification of aldehyde Biological Process GO:0005576 extracellular region Cellular Component GO:0005789 endoplasmic reticulum membrane Cellular Component GO:0005811 lipid droplet Cellular Component GO:0005829 cytosol Cellular Component GO:0005886 plasma membrane Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT4G23430 bna:106397857 hsa:207063 hsa:51109 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF09088MIF4G_like36-63 aaPF00106adh_short73-215 aaPF08659KR74-145 aaPF01370Epimerase74-141 aaPF13561adh_short_C277-219 aaPF09088MIF4G_like100-157 aaPF18285LuxT_C132-165 aaPF01370Epimerase234-263 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA01G521820 | PF09088 | MIF4G_like | 36 | 63 | 0.13 | 12.8 |
| TkA01G521820 | PF00106 | adh_short | 73 | 215 | 1e-24 | 87.8 |
| TkA01G521820 | PF08659 | KR | 74 | 145 | 0.00048 | 20.8 |
| TkA01G521820 | PF01370 | Epimerase | 74 | 141 | 0.33 | 11.0 |
| TkA01G521820 | PF13561 | adh_short_C2 | 77 | 219 | 3.4e-09 | 37.4 |
| TkA01G521820 | PF09088 | MIF4G_like | 100 | 157 | 0.13 | 12.8 |
| TkA01G521820 | PF18285 | LuxT_C | 132 | 165 | 0.17 | 13.0 |
| TkA01G521820 | PF01370 | Epimerase | 234 | 263 | 0.33 | 11.0 |
| TkA01G521820 | PF00106 | adh_short | 239 | 290 | 1e-24 | 87.8 |
| TkA01G521820 | PF13561 | adh_short_C2 | 240 | 291 | 3.4e-09 | 37.4 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.