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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G521270
Reference: TK1151 Chr: Chr01 Coordinates: 130723178-130727849 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2959 bp · TkA01G521270|TK1151|cDNA

CCGCCGACATTTTACCGCCATTTTGGTAGGAGTTCGAATCAAAACTATCGTACACACCATATGAAATCAGAACAGTTAAGTCTGAAATAGAACACTAGGTCTATGGAAGAAGATGACGAAGAAGTTATATCTGTCTCTGGTTCCAGCGATTCGAGCCAAGATTTCACCTGCGATGAATCTGAAGAGGGCGATGATGATTTATGTAGATCTGGCAGTGATGAAAGCTGTGAAGAAAACGCCCCCGCCCGACCAGCTGCGCA...

CDS

Download CDS FASTA

2739 bp · TkA01G521270|TK1151|CDS

ATGGAAGAAGATGACGAAGAAGTTATATCTGTCTCTGGTTCCAGCGATTCGAGCCAAGATTTCACCTGCGATGAATCTGAAGAGGGCGATGATGATTTATGTAGATCTGGCAGTGATGAAAGCTGTGAAGAAAACGCCCCCGCCCGACCAGCTGCGCACAATCAAAAATCGCAGAACGTGGATGCTCTTTTGAGAGGAAATCTCGTCGTCAAAAGGCAGCCACTACTTCCACGAGTTCTTTCAGTGACAGAAAGAGAAGC...

Protein

Download Protein FASTA

912 aa · TkA01G521270|TK1151|PROTEIN

MEEDDEEVISVSGSSDSSQDFTCDESEEGDDDLCRSGSDESCEENAPARPAAHNQKSQNVDALLRGNLVVKRQPLLPRVLSVTEREAVLKKPFKPPSSDGYSDQNQNLNRRLWARKRFVPWGSNRPALIPITNTFNLPVSTEEEIPEESAKLPPDIEPLFLWQPEKSENTDVDSTPIEVDHMLVKFLRPHQREGVQFMFDCVSGLCTADINGCILADDMGLGKTLQSITLLYTLLRQGFDGKPMVKKGIIVTPTSLVSNW...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G521270
TK1151 IDTkA01G521270
OH-1004 IDLXL04_001628
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)96.300
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G521270
LocationChr01:130723178-130727849 (-)
DescriptionSimilar to CHR25: Protein CHROMATIN REMODELING 25
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g19210 Dissociates RAD51 from nucleoprotein filaments formed on dsDNA. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0762800 Multifunctional ATPase that plays a role in homologous recombination (HR) which is a major pathway for repairing DNA double-strand breaks (DSBs), single-stranded DNA (ssDNA) gaps, and stalled or collapsed replication forks. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_001628 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000711 meiotic DNA repair synthesis Biological Process
GO:0000724 double-strand break repair via homologous recombination Biological Process
GO:0006281 DNA repair Biological Process
GO:0006310 DNA recombination Biological Process
GO:0006338 chromatin remodeling Biological Process
GO:0007131 reciprocal meiotic recombination Biological Process
GO:0010212 response to ionizing radiation Biological Process
GO:0010332 response to gamma radiation Biological Process
GO:0043150 DNA synthesis involved in double-strand break repair via homologous recombination Biological Process
GO:0045003 double-strand break repair via synthesis-dependent strand annealing Biological Process
GO:0051301 cell division Biological Process
GO:0051321 meiotic cell cycle Biological Process
KEGG gene cross-reference
ath:AT3G19210
dosa:Os02g0762800
dwi:6642593
gga:424611
hsa:8438
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.898
Rank 1 · TkA01G521270 · TK1151
Cytoplasm0.165
Rank 2 · TkA01G521270 · TK1151
Mitochondrion0.043
Rank 3 · TkA01G521270 · TK1151
Cell membrane0.023
Rank 4 · TkA01G521270 · TK1151
Endoplasmic reticulum0.011
Rank 5 · TkA01G521270 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04851ResIII187-359 aa
PF00176SNF2-rel_dom190-494 aa
PF00270DEAD213-362 aa
PF18766SWI2_SNF2273-363 aa
PF09848SLFN-g3_helicase302-341 aa
PF13401AAA_22322-359 aa
PF21407SduA_N416-479 aa
PF11496HDA2-3471-499 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G521270PF04851ResIII1873597.7e-1039.6
TkA01G521270PF00176SNF2-rel_dom1904943.9e-71240.2
TkA01G521270PF00270DEAD2133625.7e-0833.4
TkA01G521270PF18766SWI2_SNF22733630.0613.7
TkA01G521270PF09848SLFN-g3_helicase3023410.06913.1
TkA01G521270PF13401AAA_223223590.2412.4
TkA01G521270PF21407SduA_N4164790.06114.2
TkA01G521270PF11496HDA2-34714990.0003820.4
TkA01G521270PF11496HDA2-35366900.0003820.4
TkA01G521270PF04851ResIII5395657.7e-1039.6
TkA01G521270PF00271Helicase_C5416551e-2074.7
TkA01G521270PF18766SWI2_SNF25415790.0613.7
TkA01G521270PF00176SNF2-rel_dom6646963.9e-71240.2
TkA01G521270PF18766SWI2_SNF27187430.0613.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q0PCS3Arabidopsis thalianasp|Q0PCS3|CHR25_ARATH Protein CHROMATIN REMODELING 2570.600%Swiss-ProtHigh
A4PBL4Oryza sativa subsp. japonicasp|A4PBL4|RAD54_ORYSJ DNA repair and recombination protein RAD5474.000%Swiss-ProtHigh

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