Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2280 bp · TkA01G520620|TK1151|cDNA
ATGAACCTCCTTAAACCCTGCCGGAAAACTCTTCACTTCTCCACTCTTGCCTCCTTGACACCACCACAATCGGCACCTGATGTTCATCTCGTCGGAAAAACCATATCCATCCTCAAACGCCACCATTTAATCAACCTAGATCATCTATCGCCCCAATTTACTCCTCAATCAGCTTCTTATTTACTACTCCAGTCTCAATTTGACAAAACCCTAGTCCTACCATTCATCAATTGGGCTCGCCGACGCCCCTTCTTTGATCT...
2280 bp · TkA01G520620|TK1151|CDS
ATGAACCTCCTTAAACCCTGCCGGAAAACTCTTCACTTCTCCACTCTTGCCTCCTTGACACCACCACAATCGGCACCTGATGTTCATCTCGTCGGAAAAACCATATCCATCCTCAAACGCCACCATTTAATCAACCTAGATCATCTATCGCCCCAATTTACTCCTCAATCAGCTTCTTATTTACTACTCCAGTCTCAATTTGACAAAACCCTAGTCCTACCATTCATCAATTGGGCTCGCCGACGCCCCTTCTTTGATCT...
Protein
Download Protein FASTA759 aa · TkA01G520620|TK1151|PROTEIN
MNLLKPCRKTLHFSTLASLTPPQSAPDVHLVGKTISILKRHHLINLDHLSPQFTPQSASYLLLQSQFDKTLVLPFINWARRRPFFDLRCSCLSLHILTRFKLYKTAQIIAEDVAINARGDENGELVFTCLKDTFSDCNSSSAVIDLLVKSYSNLKLVKRGLNTIHLAISHGYMPGVLSYNSVLDAIIRSNDPIKLAEDMYLHMIKVGVSPNVFTYNILIRGFCGVKNMEKGLEFFAEMQKNGCLPNVVTYNTLIDANCKL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA01G520620 |
|---|---|
| TK1151 ID | TkA01G520620 |
| OH-1004 ID | LXL04_001647 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.600 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA01G520620 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:130541997-130544276 (+) | |||||||||
| Description | Similar to EMB2745: Pentatricopeptide repeat-containing protein At5g39710 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0005739 mitochondrion Cellular Component GO:0005783 endoplasmic reticulum Cellular Component GO:0005794 Golgi apparatus Cellular Component GO:0009507 chloroplast Cellular Component GO:0003729 mRNA binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G05670 ath:AT5G39710 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF07615Ykof98-138 aaPF17177PPR_long142-233 aaPF29070MSC6_N147-235 aaPF12854PPR_1171-184 aaPF00566RabGAP-TBC173-230 aaPF13041PPR_2174-223 aaPF13812PPR_3174-220 aaPF01535PPR178-205 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA01G520620 | PF07615 | Ykof | 98 | 138 | 0.022 | 15.9 |
| TkA01G520620 | PF17177 | PPR_long | 142 | 233 | 1.3e-46 | 159.4 |
| TkA01G520620 | PF29070 | MSC6_N | 147 | 235 | 1.9e-35 | 123.4 |
| TkA01G520620 | PF12854 | PPR_1 | 171 | 184 | 1.8e-145 | 473.0 |
| TkA01G520620 | PF00566 | RabGAP-TBC | 173 | 230 | 0.16 | 12.4 |
| TkA01G520620 | PF13041 | PPR_2 | 174 | 223 | 1.3e-185 | 602.2 |
| TkA01G520620 | PF13812 | PPR_3 | 174 | 220 | 1.5e-81 | 269.1 |
| TkA01G520620 | PF01535 | PPR | 178 | 205 | 7.8e-116 | 371.3 |
| TkA01G520620 | PF23276 | TPR_24 | 182 | 246 | 1.2e-48 | 165.1 |
| TkA01G520620 | PF17177 | PPR_long | 194 | 332 | 1.3e-46 | 159.4 |
| TkA01G520620 | PF08579 | RPM2 | 198 | 220 | 3e-06 | 28.4 |
| TkA01G520620 | PF06239 | ECSIT_N | 202 | 255 | 5.2e-06 | 26.6 |
| TkA01G520620 | PF10037 | MRP-S27 | 204 | 238 | 8.5e-09 | 35.6 |
| TkA01G520620 | PF13812 | PPR_3 | 205 | 256 | 1.5e-81 | 269.1 |
| TkA01G520620 | PF12854 | PPR_1 | 207 | 239 | 1.8e-145 | 473.0 |
| TkA01G520620 | PF01535 | PPR | 213 | 243 | 7.8e-116 | 371.3 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.