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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G518350
Reference: TK1151 Chr: Chr01 Coordinates: 129925311-129927959 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1899 bp · TkA01G518350|TK1151|cDNA

GTACCCTCTCATTTTTTTTGTTGTATTTTTTATTTTAATTCACACACCCTATCTTTCTCTACTTTCTTTCCGAATTTACCCTCCCCTTCTCCTGCAGATTTAAGTTCTGGAGGAGCGGCGGGGGTGGTTACCCGGCCGTTCATAGTAAATTACCAAAATGTCCTGGACGCCATCCAAGCAAGACAAGAACTCTCCATCCGCCATTGAAAACAATAACCATGATCATAACTTAAAATTTTCACCATTACGTAAACTCCTAC...

CDS

Download CDS FASTA

1239 bp · TkA01G518350|TK1151|CDS

ATGTCCTGGACGCCATCCAAGCAAGACAAGAACTCTCCATCCGCCATTGAAAACAATAACCATGATCATAACTTAAAATTTTCACCATTACGTAAACTCCTACCGCTCTTACACGAAACAAGCATCGGAAAATCATTAGGGAGTAGTGAAGATGAAGCCATTTTAGTAGGAGCCATTGCAGGGGCTTCATTTTTGCTCTTTCTCATTCTAATCGTCGTCTGTTGTTGTTGCTGTTTTTGTAGAAACAAACGAAAACAAAA...

Protein

Download Protein FASTA

412 aa · TkA01G518350|TK1151|PROTEIN

MSWTPSKQDKNSPSAIENNNHDHNLKFSPLRKLLPLLHETSIGKSLGSSEDEAILVGAIAGASFLLFLILIVVCCCCCFCRNKRKQKHKSNGDHKRKSSDIPLQMPPYQAPLGTSSFKYDDLATATRGFDKSMLLGQGGFGYVYKGVLPNGKKIAVKTLKANSRQGEREFQAEVDIISGVHHHHLVSLDGYCISGDKRLLVYEYIPNRTLDYHLHRNRRSVIDCSTRLKIALGAAKGFAYLHEECNPRIIHRDIKAANIL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G518350
TK1151 IDTkA01G518350
OH-1004 IDLXL04_001696
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 88.350 / OH-1004 92.857
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G518350
LocationChr01:129925311-129927959 (-)
DescriptionSimilar to PERK6: Putative proline-rich receptor-like protein kinase PERK6
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g24550 Proline-rich receptor-like protein kinase PERK1. No verified direct reference in this release
At3g18810 Putative proline-rich receptor-like protein kinase PERK6. No verified direct reference in this release
At2g18470 Required during abscisic acid (ABA)-mediated activation of Ca(2+) channels.
Plasma membrane-associated proline-rich extensin-like receptor kinase 4, a novel regulator of Ca signalling, is required for abscisic acid responses in Arabidopsis thaliana.2009 · DOI: 10.1111/j.1365-313x.2009.03956.x
Arabidopsis proline-rich extensin-like receptor kinase 4 modulates the early event toward abscisic acid response in root tip growth.2009 · DOI: 10.4161/psb.4.11.9739
At1g49270 Proline-rich receptor-like protein kinase PERK7. No verified direct reference in this release
At4g34440 Proline-rich receptor-like protein kinase PERK5. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_001696 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0009845 seed germination Biological Process
GO:0019722 calcium-mediated signaling Biological Process
GO:0046777 protein autophosphorylation Biological Process
GO:0048364 root development Biological Process
GO:0005634 nucleus Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0090406 pollen tube Cellular Component
GO:0004672 protein kinase activity Molecular Function
GO:0004674 protein serine/threonine kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
KEGG gene cross-reference
ath:AT1G49270
ath:AT1G52290
ath:AT2G18470
ath:AT3G18810
ath:AT4G34440
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.817
Rank 1 · TkA01G518350 · TK1151
Cytoplasm0.109
Rank 2 · TkA01G518350 · TK1151
Endoplasmic reticulum0.082
Rank 3 · TkA01G518350 · TK1151
Nucleus0.081
Rank 4 · TkA01G518350 · TK1151
Golgi apparatus0.028
Rank 5 · TkA01G518350 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF15347PAG45-95 aa
PF28230SCY_4732_54-77 aa
PF05478Prominin54-98 aa
PF16492Cadherin_C_255-100 aa
PF04906Tweety55-88 aa
PF14575EphA2_TM59-100 aa
PF29119F13C5_C61-88 aa
PF12104Tcell_CD4_C61-88 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G518350PF15347PAG45950.001318.6
TkA01G518350PF28230SCY_4732_54770.05114.1
TkA01G518350PF05478Prominin54980.1211.1
TkA01G518350PF16492Cadherin_C_2551000.05714.8
TkA01G518350PF04906Tweety55882.27.6
TkA01G518350PF14575EphA2_TM591000.0117.3
TkA01G518350PF29119F13C5_C61880.311.6
TkA01G518350PF12104Tcell_CD4_C61883.38.6
TkA01G518350PF16038TMIE62970.01715.6
TkA01G518350PF15102TMEM15462950.09513.3
TkA01G518350PF09716ETRAMP63900.0514.3
TkA01G518350PF29930F59B1065950.009116.7
TkA01G518350PF01456Mucin65910.1512.8
TkA01G518350PF22812CR_prot_dom_plant66850.4411.7
TkA01G518350PF23827DUF7197811050.4311.0
TkA01G518350PF29930F59B101251340.009116.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LV48Arabidopsis thalianasp|Q9LV48|PERK1_ARATH Proline-rich receptor-like protein kinase PERK165.000%Swiss-ProtHigh
Q9LS95Arabidopsis thalianasp|Q9LS95|PERK6_ARATH Putative proline-rich receptor-like protein kinase PERK668.900%Swiss-ProtMedium
Q9ZNQ8Arabidopsis thalianasp|Q9ZNQ8|PERK4_ARATH Proline-rich receptor-like protein kinase PERK466.000%Swiss-ProtHigh
Q9XI96Arabidopsis thalianasp|Q9XI96|PERK7_ARATH Proline-rich receptor-like protein kinase PERK766.800%Swiss-ProtHigh
Q8GX23Arabidopsis thalianasp|Q8GX23|PERK5_ARATH Proline-rich receptor-like protein kinase PERK566.900%Swiss-ProtHigh

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