TkA01G515410 | RubberDandelionOmics

Gene overview

TkA01G515410

Reference: TK1151 Chr: Chr01 Coordinates: 129154073-129155342 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1041 bp · TkA01G515410|TK1151|cDNA

CAACAATCAAAGATTTAAACAACTTTCTTCTCCAGAATAACACATTCCCATTGAAAATCTCGTAATGTACATTCCAAACATCGGCGGAATCCACGATTCCGATGTTGTGTCACAGCAAGGATTATGTGAATCAAGAGATTGTAGGAGTCATGAAAGGTTGTCAATGGGTGAAACGGATTCGTGTATCAGATTCCATTCCGATCATGATGAGTGTCGAAATGTTATCGTGGGATTTCCTTTGGCGTATGAAGATACCCAAG...

CDS

Download CDS FASTA

945 bp · TkA01G515410|TK1151|CDS

ATGTACATTCCAAACATCGGCGGAATCCACGATTCCGATGTTGTGTCACAGCAAGGATTATGTGAATCAAGAGATTGTAGGAGTCATGAAAGGTTGTCAATGGGTGAAACGGATTCGTGTATCAGATTCCATTCCGATCATGATGAGTGTCGAAATGTTATCGTGGGATTTCCTTTGGCGTATGAAGATACCCAAGATTCCAAGAGCTATCTCCATGGAATCGGGAATGTAATTTCTGATTCCAAGTATCTAGAAGCAAC...

Protein

Download Protein FASTA

314 aa · TkA01G515410|TK1151|PROTEIN

MYIPNIGGIHDSDVVSQQGLCESRDCRSHERLSMGETDSCIRFHSDHDECRNVIVGFPLAYEDTQDSKSYLHGIGNVISDSKYLEATQSLLHDAVNVKKGLKQQFKHESLNKCRKVLMESDSIPVTPSGKQDLQNKITKLSSMLNEVDRRYKQYYHEIQIVVSSFDALAGHGASIPYTALTLQTVSRQFRFLKDAIKRQIQVMSTRLGKTDSDGEGIRIPRLRFVDQKVSVSRVQQLGRIWRPQRGLPERSVSILRAWLF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G515410`
TK1151 ID	TkA01G515410
OH-1004 ID	LXL04_001743
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G515410

Location Chr01:129154073-129155342 (+)

Description Similar to BLH7: BEL1-like homeodomain protein 7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g16400`	BEL1-like homeodomain protein 7.	No verified direct reference in this release
`At1g75410`	Transcription factor involved in the nuclear import of SHOOT MERISTEMLESS (STM).	No verified direct reference in this release
`At1g19700`	BEL1-like homeodomain protein 10.	No verified direct reference in this release
`At2g35940`	BEL1-like homeodomain protein 1.	No verified direct reference in this release
`At4g36870`	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001743 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0009965 leaf morphogenesis Biological Process

GO:0048363 mucilage pectin metabolic process Biological Process

GO:0048510 regulation of timing of transition from vegetative to reproductive phase Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

KEGG gene cross-reference

ath:AT1G19700

ath:AT1G75410

ath:AT2G16400

ath:AT4G34610

ath:AT4G36870

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.908

Rank 1 · TkA01G515410 · TK1151

Cytoplasm0.169

Rank 2 · TkA01G515410 · TK1151

Cell membrane0.024

Rank 3 · TkA01G515410 · TK1151

Mitochondrion0.019

Rank 4 · TkA01G515410 · TK1151

Endoplasmic reticulum0.010

Rank 5 · TkA01G515410 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07526POX77-196 aa

PF11083Relaxase_C77-163 aa

PF23739HTH_72162-184 aa

PF00046Homeodomain182-206 aa

PF11083Relaxase_C186-212 aa

PF00046Homeodomain228-253 aa

PF05920Homeobox_KN258-297 aa

PF00046Homeodomain265-297 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G515410	`PF07526`	POX	77	196	8.7e-36	124.1
TkA01G515410	`PF11083`	Relaxase_C	77	163	0.049	14.6
TkA01G515410	`PF23739`	HTH_72	162	184	0.029	15.0
TkA01G515410	`PF00046`	Homeodomain	182	206	4.4e-07	30.3
TkA01G515410	`PF11083`	Relaxase_C	186	212	0.049	14.6
TkA01G515410	`PF00046`	Homeodomain	228	253	4.4e-07	30.3
TkA01G515410	`PF05920`	Homeobox_KN	258	297	1.4e-19	70.4
TkA01G515410	`PF00046`	Homeodomain	265	297	4.4e-07	30.3
TkA01G515410	`PF23739`	HTH_72	275	310	0.029	15.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SIW1`	Arabidopsis thaliana	sp\|Q9SIW1\|BLH7_ARATH BEL1-like homeodomain protein 7	60.200%	Swiss-Prot	High
`Q9FWS9`	Arabidopsis thaliana	sp\|Q9FWS9\|BLH3_ARATH BEL1-like homeodomain protein 3	52.900%	Swiss-Prot	High
`Q9FXG8`	Arabidopsis thaliana	sp\|Q9FXG8\|BLH10_ARATH BEL1-like homeodomain protein 10	51.000%	Swiss-Prot	High
`Q9SJ56`	Arabidopsis thaliana	sp\|Q9SJ56\|BLH1_ARATH BEL1-like homeodomain protein 1	44.700%	Swiss-Prot	Medium
`Q9SW80`	Arabidopsis thaliana	sp\|Q9SW80\|BLH2_ARATH BEL1-like homeodomain protein 2	48.300%	Swiss-Prot	Medium

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