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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G509520
Reference: TK1151 Chr: Chr01 Coordinates: 127658709-127662855 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2273 bp · TkA01G509520|TK1151|cDNA

TTTTGTTGAGAAAATAACCAAAGACCATAGATTTTGGTAAAAATGAAGTCCGTATACAAAACTCTAATTCGGGTTTGGGCCAAATCGCTACCAAACCTACCGGCTACCGGTGTTTAAACCCTCCGACCAACAAGCTGACCCCTATTTTCTCATTTGCAAGTTTGTCACGAGCTCTCTTATAATTGGCTGGAGCTATATACCACCTTATCAATGGCCCTCGTTTCAGACTCCATGACCTTATCGATAATCAATGGCCTTTG...

CDS

Download CDS FASTA

1110 bp · TkA01G509520|TK1151|CDS

ATGGTGGTGACAAATGTTGAAGAGTATCAGGCAATTGCCAAGGAAAAGTTGCCTAAGAATGCCTACGACTACTATGCTTCTGGTGCTGAGGATCAATGGACACTAGCTGAAAACAGAAACGCCTTTTCAAGAATCTTGTTTAGGCCCCGTATTCTTATTGATGTAAGCAAGATAGACATGACCACCACAGTTTTGGGATACAAATTATCCATGCCTATAATGATCGCACCAACAGCCTTTCAGAAAATGGCTCATCCAGA...

Protein

Download Protein FASTA

369 aa · TkA01G509520|TK1151|PROTEIN

MVVTNVEEYQAIAKEKLPKNAYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVSKIDMTTTVLGYKLSMPIMIAPTAFQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVKWLQTITSMPILVKGVITAEDTRLAIQAGAAGIIVSNHGARQLD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G509520
TK1151 IDTkA01G509520
OH-1004 IDLXL04_001795
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)98.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G509520
LocationChr01:127658709-127662855 (-)
DescriptionSimilar to Peroxisomal (S)-2-hydroxy-acid oxidase
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g14420 Catalyzes the oxidation of glycolate to glyoxylate, with a reduction of O2 to H2O2. No verified direct reference in this release
At3g14415 Catalyzes the oxidation of glycolate to glyoxylate, with a reduction of O2 to H2O2. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: B8B7C5 Catalyzes the oxidation of glycolate to glyoxylate, with a reduction of O2 to H2O2. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_001795 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009853 photorespiration Biological Process
GO:0009854 oxidative photosynthetic carbon pathway Biological Process
GO:0010109 regulation of photosynthesis Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0046718 symbiont entry into host cell Biological Process
GO:0050665 hydrogen peroxide biosynthetic process Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005777 peroxisome Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009506 plasmodesma Cellular Component
KEGG gene cross-reference
ath:AT3G14415
ath:AT3G14420
dosa:Os07g0152900
zma:100279535
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Peroxisome0.596
Rank 1 · TkA01G509520 · TK1151
Mitochondrion0.253
Rank 2 · TkA01G509520 · TK1151
Cytoplasm0.104
Rank 3 · TkA01G509520 · TK1151
Plastid0.041
Rank 4 · TkA01G509520 · TK1151
Nucleus0.037
Rank 5 · TkA01G509520 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01070FMN_dh13-355 aa
PF01180DHO_dh61-104 aa
PF02225PA90-104 aa
PF02225PA138-160 aa
PF04481DUF561179-253 aa
PF02581TMP-TENI210-252 aa
PF01180DHO_dh210-248 aa
PF05690ThiG217-261 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G509520PF01070FMN_dh133557.7e-139463.3
TkA01G509520PF01180DHO_dh611040.02714.4
TkA01G509520PF02225PA901041.39.9
TkA01G509520PF02225PA1381601.39.9
TkA01G509520PF04481DUF5611792530.02714.4
TkA01G509520PF02581TMP-TENI2102520.00516.9
TkA01G509520PF01180DHO_dh2102480.02714.4
TkA01G509520PF05690ThiG2172610.00119.2
TkA01G509520PF00977His_biosynth2212610.0116.0
TkA01G509520PF04481DUF5612212750.02714.4
TkA01G509520PF03060NMO2273377.1e-0523.1
TkA01G509520PF02225PA2352571.39.9
TkA01G509520PF02581TMP-TENI2633070.00516.9
TkA01G509520PF00478IMPDH2643118.2e-0625.8
TkA01G509520PF04481DUF5612643110.02714.4
TkA01G509520PF01180DHO_dh2653130.02714.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LRR9Arabidopsis thalianasp|Q9LRR9|GLO1_ARATH Glycolate oxidase 188.600%Swiss-ProtHigh
Q9LRS0Arabidopsis thalianasp|Q9LRS0|GLO2_ARATH Glycolate oxidase 288.200%Swiss-ProtHigh
B8B7C5Oryza sativa subsp. indicasp|B8B7C5|GLO5_ORYSI Glycolate oxidase 588.200%Swiss-ProtHigh

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