TkA01G496880 | RubberDandelionOmics

Gene overview

TkA01G496880

Reference: TK1151 Chr: Chr01 Coordinates: 124356036-124356473 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

438 bp · TkA01G496880|TK1151|cDNA

AACATTGCAAACACCGATTCATCCTCTTACACCACCGTCCTCCACGCTTACGTAAAAAACCAACGTTTGAACAAACCCTCGACACCCAAACCCTCCGTCATTATAACTCCGACTACAGAATCACAAGTGCAAGCCGCCGTTCTTTGCGCTAAGAAAGTCGGTGTTCAGATTAAGATTCGTAGCGGCGGTCATGACTACGAAGGGATCTCGTATACTTCATCCGACCCTGATTTTATTATACTCGATATGTTCAATTTTCG...

CDS

Download CDS FASTA

438 bp · TkA01G496880|TK1151|CDS

AACATTGCAAACACCGATTCATCCTCTTACACCACCGTCCTCCACGCTTACGTAAAAAACCAACGTTTGAACAAACCCTCGACACCCAAACCCTCCGTCATTATAACTCCGACTACAGAATCACAAGTGCAAGCCGCCGTTCTTTGCGCTAAGAAAGTCGGTGTTCAGATTAAGATTCGTAGCGGCGGTCATGACTACGAAGGGATCTCGTATACTTCATCCGACCCTGATTTTATTATACTCGATATGTTCAATTTTCG...

Protein

Download Protein FASTA

145 aa · TkA01G496880|TK1151|PROTEIN

NIANTDSSSYTTVLHAYVKNQRLNKPSTPKPSVIITPTTESQVQAAVLCAKKVGVQIKIRSGGHDYEGISYTSSDPDFIILDMFNFRQIDVNIADETTVVVAGALSGGFYYRIYEKSKVHGCKVRKKEVRLRTNPYHRIWDEINI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G496880`
TK1151 ID	TkA01G496880
OH-1004 ID	LXL04_021273
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	94.000
Protein coverage (%)	TK1151 80.000 / OH-1004 21.129 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G496880

Location Chr01:124356036-124356473 (-)

Description Similar to At1g11770: Berberine bridge enzyme-like 2

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g20840`	Berberine bridge enzyme-like 21.	No verified direct reference in this release
`At4g20830`	Berberine bridge enzyme-like 19.	No verified direct reference in this release
`At1g11770`	Berberine bridge enzyme-like 2.	No verified direct reference in this release
`At1g30720`	Berberine bridge enzyme-like 10.	No verified direct reference in this release
`At1g30700`	Berberine bridge enzyme-like 8.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021273 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006979 response to oxidative stress Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0048046 apoplast Cellular Component

GO:0016491 oxidoreductase activity Molecular Function

KEGG gene cross-reference

ath:AT1G01980

ath:AT1G11770

ath:AT1G30740

ath:AT4G20830

ath:AT4G20840

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.809

Rank 1 · TkA01G496880 · TK1151

Cytoplasm0.107

Rank 2 · TkA01G496880 · TK1151

Nucleus0.022

Rank 3 · TkA01G496880 · TK1151

Endoplasmic reticulum0.022

Rank 4 · TkA01G496880 · TK1151

Lysosome / Vacuole0.020

Rank 5 · TkA01G496880 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01565FAD_binding_431-105 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G496880	`PF01565`	FAD_binding_4	31	105	1.2e-09	38.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SVG3`	Arabidopsis thaliana	sp\|Q9SVG3\|BBE21_ARATH Berberine bridge enzyme-like 21	52.900%	Swiss-Prot	High
`Q9SVG4`	Arabidopsis thaliana	sp\|Q9SVG4\|RETOL_ARATH Berberine bridge enzyme-like 19	51.200%	Swiss-Prot	High
`Q9SA99`	Arabidopsis thaliana	sp\|Q9SA99\|BBE2_ARATH Berberine bridge enzyme-like 2	54.500%	Swiss-Prot	High
`Q9SA87`	Arabidopsis thaliana	sp\|Q9SA87\|BBE10_ARATH Berberine bridge enzyme-like 10	51.800%	Swiss-Prot	High
`Q9SA85`	Arabidopsis thaliana	sp\|Q9SA85\|BBE8_ARATH Berberine bridge enzyme-like 8	55.000%	Swiss-Prot	High

JBrowse

View in Genome Browser

Gene Card