TkA01G495730 | RubberDandelionOmics

Gene overview

TkA01G495730

Reference: TK1151 Chr: Chr01 Coordinates: 124072520-124083022 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3085 bp · TkA01G495730|TK1151|cDNA

ATCAAGAGAAAGTTGGGTGGGATTTTCTTTAGGCGTCTTTCTTATCCTAGTAAACTTATGTCTATTTTGTAGTTTTCACTATTTGTCTTCTAAAGATGACTTTTATTGTTAGTATAGATGCCCAATTTATTGGAATAAACACGAGTGATACGTTTGTTGTCGGTGGAATTGTGGATATGTCATCTCGAGCAGGCAAAGAGGCTAGAGTTGCCATGGAAATGGCGATAGATGATTTCCGTGCAAAAACAAATCAAAACTTG...

CDS

Download CDS FASTA

1422 bp · TkA01G495730|TK1151|CDS

ATGACTTTTATTGTTAGTATAGATGCCCAATTTATTGGAATAAACACGAGTGATACGTTTGTTGTCGGTGGAATTGTGGATATGTCATCTCGAGCAGGCAAAGAGGCTAGAGTTGCCATGGAAATGGCGATAGATGATTTCCGTGCAAAAACAAATCAAAACTTGACTCTTTACGCAACAAATTCAAAAGGAAATATTGTTCAAGCAATCCATGCAGCCACCTACCTCATTGATACACACAACGTTGATGCGATTTTAGG...

Protein

Download Protein FASTA

473 aa · TkA01G495730|TK1151|PROTEIN

MTFIVSIDAQFIGINTSDTFVVGGIVDMSSRAGKEARVAMEMAIDDFRAKTNQNLTLYATNSKGNIVQAIHAATYLIDTHNVDAILGLQTLEEVLSVAEITTEAQVPTFSLFDSVPQWALDQYPFLFQASPSQFPQMKAFVAILQSYGWSRFTFIYEDINSASTQVIPHLMESIKGSGVEISSIVNFSPSSPSFSFPQLLEKIKTKQCRVFLVHTSLETGVSFFQNAKSMGMMEKGYIWITTSLITDLLHTVNSSTFSMM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G495730`
TK1151 ID	TkA01G495730
OH-1004 ID	LXL04_001944
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	38.900
Protein coverage (%)	TK1151 92.178 / OH-1004 50.120 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G495730

Location Chr01:124072520-124083022 (+)

Description Similar to GLR2.6: Glutamate receptor 2.6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g07520`	Glutamate-gated receptor that probably acts as a non-selective cation channel.	Arabidopsis thaliana glutamate receptor ion channel function demonstrated by ion pore transplantation.2008 · DOI: 10.1016/j.jmb.2008.06.076
`At5g11210`	Glutamate-gated receptor that probably acts as a non-selective cation channel.	No verified direct reference in this release
`At1g42540`	Glutamate-gated receptor that probably acts as a non-selective cation channel, at least in roots and hypocotyls (Probable).	Calcium entry mediated by GLR3.3, an Arabidopsis glutamate receptor with a broad agonist profile.2006 · DOI: 10.1104/pp.106.088989 Glutamate receptor subtypes evidenced by differences in desensitization and dependence on the GLR3.3 and GLR3.4 genes.2008 · DOI: 10.1104/pp.107.108134 Glutamate receptor-like channel3.3 is involved in mediating glutathione-triggered cytosolic calcium transients, transcriptional changes, and innate immunity responses in Arabidopsis.2013 · DOI: 10.1104/pp.113.217208 Involvement of the glutamate receptor AtGLR3.3 in plant defense signaling and resistance to Hyaloperonospora arabidopsidis.2013 · DOI: 10.1111/tpj.12311 GLUTAMATE RECEPTOR-LIKE genes mediate leaf-to-leaf wound signalling.2013 · DOI: 10.1038/nature12478 Real-time, in vivo intracellular recordings of caterpillar-induced depolarization waves in sieve elements using aphid electrodes.2014 · DOI: 10.1111/nph.12807

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001944 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006816 calcium ion transport Biological Process

GO:0006874 intracellular calcium ion homeostasis Biological Process

GO:0009416 response to light stimulus Biological Process

GO:0019722 calcium-mediated signaling Biological Process

GO:0071230 cellular response to amino acid stimulus Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0005262 calcium channel activity Molecular Function

GO:0008066 glutamate receptor activity Molecular Function

GO:0015276 ligand-gated monoatomic ion channel activity Molecular Function

GO:0038023 signaling receptor activity Molecular Function

KEGG gene cross-reference

ath:AT2G24720

ath:AT2G29110

ath:AT2G29120

ath:AT5G11180

ath:AT5G27100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.475

Rank 1 · TkA01G495730 · TK1151

Extracellular0.201

Rank 2 · TkA01G495730 · TK1151

Cytoplasm0.102

Rank 3 · TkA01G495730 · TK1151

Endoplasmic reticulum0.086

Rank 4 · TkA01G495730 · TK1151

Lysosome / Vacuole0.047

Rank 5 · TkA01G495730 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13458Peripla_BP_622-314 aa

PF01094ANF_receptor37-322 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G495730	`PF13458`	Peripla_BP_6	22	314	3.2e-26	93.5
TkA01G495730	`PF01094`	ANF_receptor	37	322	1.1e-47	163.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8LGN1`	Arabidopsis thaliana	sp\|Q8LGN1\|GLR14_ARATH Glutamate receptor 1.4	27.400%	Swiss-Prot	Low
`Q9LFN5`	Arabidopsis thaliana	sp\|Q9LFN5\|GLR25_ARATH Glutamate receptor 2.5	27.800%	Swiss-Prot	Low
`Q9C8E7`	Arabidopsis thaliana	sp\|Q9C8E7\|GLR33_ARATH Glutamate receptor 3.3	23.600%	Swiss-Prot	Low

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