TkA01G490200 | RubberDandelionOmics

Gene overview

TkA01G490200

Reference: TK1151 Chr: Chr01 Coordinates: 122675054-122678932 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2563 bp · TkA01G490200|TK1151|cDNA

CTGGAAGAAAACGAAAAACGAAATGGCGCTCATTCCTGTGGCTCCTACTCTTGCTGCTAGCAGCTCACGGCTTAGCGTGCTACAGCCAATCGTACGCGTTACACCCGCCAGTCGCCGCCGATCTCCAGTTCTGGTCAACTTATCTTCTCCGCCGCGCAGTGTCGAAGCGGTGGATTGGGTGGAGGCGACATCAAGCTTCTTTGAACAAGATACCAGACCTATCATGCTATTTGACGGTGTCTGCAACTTATGTAACGGAG...

CDS

Download CDS FASTA

555 bp · TkA01G490200|TK1151|CDS

ATGGCGCTCATTCCTGTGGCTCCTACTCTTGCTGCTAGCAGCTCACGGCTTAGCGTGCTACAGCCAATCGTACGCGTTACACCCGCCAGTCGCCGCCGATCTCCAGTTCTGGTCAACTTATCTTCTCCGCCGCGCAGTGTCGAAGCGGTGGATTGGGTGGAGGCGACATCAAGCTTCTTTGAACAAGATACCAGACCTATCATGCTATTTGACGGTGTCTGCAACTTATGTAACGGAGGTGTCAAGTTCGTACGTGATAA...

Protein

Download Protein FASTA

184 aa · TkA01G490200|TK1151|PROTEIN

MALIPVAPTLAASSSRLSVLQPIVRVTPASRRRSPVLVNLSSPPRSVEAVDWVEATSSFFEQDTRPIMLFDGVCNLCNGGVKFVRDNDRQRKIRFEALQSDAGKNLLQRSGRSPDDISSVVLVEKNRSYIKSEAVLKIMEYIDLPFPQLAFFLQFVPLFIRDFVYENIADNRYTVFGRSESCEL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G490200`
TK1151 ID	TkA01G490200
OH-1004 ID	LXL04_011550
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	39.000
Protein coverage (%)	TK1151 63.043 / OH-1004 55.981 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G490200

Location Chr01:122675054-122678932 (+)

Description Similar to yuxK: Uncharacterized protein YuxK (Bacillus subtilis (strain 168)

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g52590`	DCC family protein At1g52590, chloroplastic.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011550 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0010287 plastoglobule Cellular Component

GO:0015035 protein-disulfide reductase activity Molecular Function

KEGG gene cross-reference

ath:AT1G52590

bsu:BSU31500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.981

Rank 1 · TkA01G490200 · TK1151

Mitochondrion0.027

Rank 2 · TkA01G490200 · TK1151

Nucleus0.019

Rank 3 · TkA01G490200 · TK1151

Cytoplasm0.019

Rank 4 · TkA01G490200 · TK1151

Cell membrane0.012

Rank 5 · TkA01G490200 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04134DCC1-like69-178 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G490200	`PF04134`	DCC1-like	69	178	2.3e-28	100.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SSR1`	Arabidopsis thaliana	sp\|Q9SSR1\|Y1259_ARATH DCC family protein At1g52590, chloroplastic	74.700%	Swiss-Prot	High

JBrowse

View in Genome Browser

Gene Card