TkA01G482250 | RubberDandelionOmics

Gene overview

TkA01G482250

Reference: TK1151 Chr: Chr01 Coordinates: 120744656-120746808 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1869 bp · TkA01G482250|TK1151|cDNA

ATGAAGGAAGTGATCAAGACAACAAACGAAGAGCTCTTATTAAAAGTTTGGGTAAGTTTCTATGTTGGTCAGAAATATAAAACAAAACAAGAATTGAAGGAGAAAATTGATATGCATGCTCTTGAAACACGAAGAAATTTATACTTTAAAAAAAATGACAACAAAAGGCTTAGAGCACAATGTAGAGGGATTGTCCCTGTATCTAATAAATGCGAAGTGTATAGCTCAAAAATCACATCTAAATGCAAGGGTAAAGAAGT...

CDS

Download CDS FASTA

1869 bp · TkA01G482250|TK1151|CDS

ATGAAGGAAGTGATCAAGACAACAAACGAAGAGCTCTTATTAAAAGTTTGGGTAAGTTTCTATGTTGGTCAGAAATATAAAACAAAACAAGAATTGAAGGAGAAAATTGATATGCATGCTCTTGAAACACGAAGAAATTTATACTTTAAAAAAAATGACAACAAAAGGCTTAGAGCACAATGTAGAGGGATTGTCCCTGTATCTAATAAATGCGAAGTGTATAGCTCAAAAATCACATCTAAATGCAAGGGTAAAGAAGT...

Protein

Download Protein FASTA

622 aa · TkA01G482250|TK1151|PROTEIN

MKEVIKTTNEELLLKVWVSFYVGQKYKTKQELKEKIDMHALETRRNLYFKKNDNKRLRAQCRGIVPVSNKCEVYSSKITSKCKGKEVNSQMSTCSWSIHASRTDLESDWFITTMHETHSCMKTRKLRACTATFISKQILDQVEANPVVPLRALQDHIQKKYEVGVSMDKVYRAKDKAKQLVVGDYTKQYELLRDYVLELQATNADTTVKIDKGFSACLRDLLGLDGAFMKGPFPGQVLSAVGLDSNNGIYPLAYAIVESE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G482250`
TK1151 ID	TkA01G482250
OH-1004 ID	LXL04_002375
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	91.400
Protein coverage (%)	TK1151 97.267 / OH-1004 75.206 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA01G482250`
Location	Chr01:120744656-120746808 (-)
Description	Protein of unknown function
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_002375` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	No functional description available
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.953

Rank 1 · TkA01G482250 · TK1151

Cytoplasm0.089

Rank 2 · TkA01G482250 · TK1151

Cell membrane0.025

Rank 3 · TkA01G482250 · TK1151

Endoplasmic reticulum0.017

Rank 4 · TkA01G482250 · TK1151

Mitochondrion0.014

Rank 5 · TkA01G482250 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03108DBD_Tnp_Mut21-63 aa

PF10551MULE88-124 aa

PF03108DBD_Tnp_Mut92-103 aa

PF00872Transposase_mut152-172 aa

PF10551MULE222-317 aa

PF00872Transposase_mut237-320 aa

PF04434SWIM470-499 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G482250	`PF03108`	DBD_Tnp_Mut	21	63	8.2e-07	29.3
TkA01G482250	`PF10551`	MULE	88	124	4.4e-20	72.6
TkA01G482250	`PF03108`	DBD_Tnp_Mut	92	103	8.2e-07	29.3
TkA01G482250	`PF00872`	Transposase_mut	152	172	2.3e-06	27.5
TkA01G482250	`PF10551`	MULE	222	317	4.4e-20	72.6
TkA01G482250	`PF00872`	Transposase_mut	237	320	2.3e-06	27.5
TkA01G482250	`PF04434`	SWIM	470	499	1.1e-09	38.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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