Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1452 bp · TkA01G478150|TK1151|cDNA
TTTAATCCCTCATCCAAACATGGTAAAATGTTATCCTGATTAGATAGAAACTGCATTGAAATGTGTGAGCACATTGGCGCGACAAGAGACACCACAAGCGTATGTTGATCCTGGCAAGAGGGGCGAATTACAGTTACAATTACGCGGCCATGGCAGCAAGCTTTTGCCCCGCAATCCCCCACCACTTCAAACCAACACCCATATCCAGATTTCCCAAAGTCTCTTTCTCCTTTAAAGTGTTCTCTTCTCAAACCTCCGCA...
1044 bp · TkA01G478150|TK1151|CDS
ATGTTGATCCTGGCAAGAGGGGCGAATTACAGTTACAATTACGCGGCCATGGCAGCAAGCTTTTGCCCCGCAATCCCCCACCACTTCAAACCAACACCCATATCCAGATTTCCCAAAGTCTCTTTCTCCTTTAAAGTGTTCTCTTCTCAAACCTCCGCAGATGAAAACCCTACGCGTGTGGGATTTCTTGGTCTTGGAATCATGGGTTCCCCAATGGCTCAAAATTTGATAAAAGCCGGATGCGATGTGACTGTTTGGAA...
Protein
Download Protein FASTA347 aa · TkA01G478150|TK1151|PROTEIN
MLILARGANYSYNYAAMAASFCPAIPHHFKPTPISRFPKVSFSFKVFSSQTSADENPTRVGFLGLGIMGSPMAQNLIKAGCDVTVWNRTKSKCDPLIDLGAKYKPSPGEVAASCDVTFAMLADPESAMDVACGEYGAASGMSQGKGYVDISTVDGPTSKLINGQIKETGALFLEAPVSGSKKPAEDGQLIFLTAGDKILYDKVSPYLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMTSFAEGLLLGEKVGLDPTVIVE...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA01G478150 |
|---|---|
| TK1151 ID | TkA01G478150 |
| OH-1004 ID | LXL04_002161 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA01G478150 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:119747425-119751198 (-) | |||||||||
| Description | Similar to GLYR2: Glyoxylate/succinic semialdehyde reductase 2, chloroplastic | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006979 response to oxidative stress Biological Process GO:0045815 transcription initiation-coupled chromatin remodeling Biological Process GO:0140673 transcription elongation-coupled chromatin remodeling Biological Process GO:0000785 chromatin Cellular Component GO:0000786 nucleosome Cellular Component GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005829 cytosol Cellular Component GO:0009507 chloroplast Cellular Component GO:0009570 chloroplast stroma Cellular Component GO:0003677 DNA binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G17650 ath:AT3G25530 bta:539636 gga:426988 rno:360477 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF028262-Hacid_dh_C57-121 aaPF01488Shikimate_DH57-97 aaPF03446NAD_binding_259-218 aaPF03807F420_oxidored59-151 aaPF027373HCDH_N60-92 aaPF01210NAD_Gly3P_dh_N60-96 aaPF02558ApbA61-110 aaPF03435Sacchrp_dh_NADP61-110 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA01G478150 | PF02826 | 2-Hacid_dh_C | 57 | 121 | 7.3e-05 | 22.9 |
| TkA01G478150 | PF01488 | Shikimate_DH | 57 | 97 | 0.00084 | 20.1 |
| TkA01G478150 | PF03446 | NAD_binding_2 | 59 | 218 | 3.5e-43 | 148.2 |
| TkA01G478150 | PF03807 | F420_oxidored | 59 | 151 | 1.8e-05 | 25.9 |
| TkA01G478150 | PF02737 | 3HCDH_N | 60 | 92 | 0.008 | 16.8 |
| TkA01G478150 | PF01210 | NAD_Gly3P_dh_N | 60 | 96 | 0.14 | 12.9 |
| TkA01G478150 | PF02558 | ApbA | 61 | 110 | 0.0009 | 19.6 |
| TkA01G478150 | PF03435 | Sacchrp_dh_NADP | 61 | 110 | 0.05 | 14.7 |
| TkA01G478150 | PF21761 | RedAm-like_C | 219 | 342 | 0.19 | 12.7 |
| TkA01G478150 | PF01488 | Shikimate_DH | 220 | 236 | 0.00084 | 20.1 |
| TkA01G478150 | PF14833 | NAD_binding_11 | 221 | 340 | 1.4e-28 | 100.3 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.