TkA01G463860 | RubberDandelionOmics

Gene overview

TkA01G463860

Reference: TK1151 Chr: Chr01 Coordinates: 116216667-116228293 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3692 bp · TkA01G463860|TK1151|cDNA

CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTTATCTTAGCCTGGAAGGAGAACATGGAGAAGCTACCGGATGTTCGAACGATTGTTCCCCGACAAGTTCTAGAAATGGCGAAGAGGTGGATTCTTGATGGTAGAACTCTTGCAAGAACCATAAAAGCAACTGGACTTCCTTCACACCTTCAAATCAAAGATTGTGTAGCAAATTGGGAATGTCCACAATGCGGCTGTACAAGTGATGATAACGATGTGTCAAATGAGT...

CDS

Download CDS FASTA

1506 bp · TkA01G463860|TK1151|CDS

ATGAATCGCGCCAAGAACTCTATGAAGGATGTAAAAAGTTATTCAAAATTTTCATTCATTGTTACCATTCTACATTTAAAGACAACAAGTGGTTGGTCCATCAAATCTTTTGATCTTATGCTTGATGTATTCAGAAAAGCTTTGCCAACTCCATCATTGGTACCAAAAAATTTTTATGAAGCAAAAAAGTACATACGTTATTTGGGGTTTCAGGGAGAAAAAATTCATGCATGTGTTAATGATTGCATTCTTTATCGAAA...

Protein

Download Protein FASTA

501 aa · TkA01G463860|TK1151|PROTEIN

MNRAKNSMKDVKSYSKFSFIVTILHLKTTSGWSIKSFDLMLDVFRKALPTPSLVPKNFYEAKKYIRYLGFQGEKIHACVNDCILYRKEYASHTHCPNHDCKEPRFSGNNLKVPRKVLRYFPLKPRLQRLFIDKQVACDMRWHKEKRVDNDNIVRHPADSEAWKHLDKEFPSFAIDPRNICLGLATDGFNPFGNLSSSYSIWPVFVVPYNLPPWKCMKDPYMFMSMLIPGPKSPCNNIDVYLQPLIDELNELWVGVNAYDA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G463860`
TK1151 ID	TkA01G463860
OH-1004 ID	LXL04_016251
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	47.400
Protein coverage (%)	TK1151 95.010 / OH-1004 33.085 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G463860

Location Chr01:116216667-116228293 (-)

Description Protein of unknown function

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g25580`	Transcription factor regulating the transcriptional activation response to gamma irradiation.	Suppressor of gamma response 1 (SOG1) encodes a putative transcription factor governing multiple responses to DNA damage.2009 · DOI: 10.1073/pnas.0810304106 A shared DNA-damage-response pathway for induction of stem-cell death by UVB and by gamma irradiation.2010 · DOI: 10.1016/j.dnarep.2010.06.006 Arabidopsis casein kinase 2 triggers stem cell exhaustion under Al toxicity and phosphate deficiency through activating the DNA damage response pathway.2021 · DOI: 10.1093/plcell/koab005
`At4g29230`	Transcription activator involved in xylem formation.	No verified direct reference in this release
`At4g28500`	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers.	A battery of transcription factors involved in the regulation of secondary cell wall biosynthesis in Arabidopsis.2008 · DOI: 10.1105/tpc.108.061325 SND2, a NAC transcription factor gene, regulates genes involved in secondary cell wall development in Arabidopsis fibres and increases fibre cell area in Eucalyptus.2011 · DOI: 10.1186/1471-2229-11-173
`At1g28470`	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers.	A battery of transcription factors involved in the regulation of secondary cell wall biosynthesis in Arabidopsis.2008 · DOI: 10.1105/tpc.108.061325

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_016251 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source) No functional description available

KEGG gene cross-reference No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.914

Rank 1 · TkA01G463860 · TK1151

Cytoplasm0.163

Rank 2 · TkA01G463860 · TK1151

Mitochondrion0.020

Rank 3 · TkA01G463860 · TK1151

Cell membrane0.014

Rank 4 · TkA01G463860 · TK1151

Extracellular0.012

Rank 5 · TkA01G463860 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF21171PDE12-like_N109-163 aa

PF02992Transposase_21150-359 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G463860	`PF21171`	PDE12-like_N	109	163	0.012	16.3
TkA01G463860	`PF02992`	Transposase_21	150	359	1.5e-97	325.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q6NQK2`	Arabidopsis thaliana	sp\|Q6NQK2\|NAC8_ARATH SUPPRESSOR OF GAMMA RESPONSE 1	46.700%	Swiss-Prot	Medium
`Q9M0F8`	Arabidopsis thaliana	sp\|Q9M0F8\|NAC75_ARATH NAC domain-containing protein 75	51.200%	Swiss-Prot	Medium
`O49459`	Arabidopsis thaliana	sp\|O49459\|NAC73_ARATH NAC domain-containing protein 73	50.000%	Swiss-Prot	Medium
`F4HY61`	Arabidopsis thaliana	sp\|F4HY61\|NAC10_ARATH NAC domain-containing protein 10	54.900%	Swiss-Prot	Low

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