TkA01G455640 | RubberDandelionOmics

Gene overview

TkA01G455640

Reference: TK1151 Chr: Chr01 Coordinates: 114051662-114057957 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3108 bp · TkA01G455640|TK1151|cDNA

TTTCCAGATAACCCAGAATAAAAATTGTACGTAAATATAACTCTTTTTGGTAGCTTTAAAAGCCAATATTTTAGAAATCTATTGTGGTTATGGTGGAGCCATTTTTCAAACTTAAACGAAAAGAGAAAGCAAATGGGACCCAGTTGAATCTTTAAAAGAAGTTGCTCAGCGTCTCGAATTCATCTAAACACCACCATCTTCACCATCAAAAATAGCCAAAACAAACCAGAATTTCTTTCCCTCAAACTTTACTTTTTTTC...

CDS

Download CDS FASTA

2184 bp · TkA01G455640|TK1151|CDS

ATGTTGAAAATCCCCAGAATCAAAACCCATTTGCTGTTATTACTCGTTATTATCTTCTCTTCTGTTTGTTCTTCCATTAACGCTGATGTTACTTACGACGATAAGGCCATCATCATCAATGGCAGACGAAGAATTCTTATGTCGGGCTCAATTCATTACCCGCGAAGCACCCCTGAGATGTGGCCTGATCTTATAAAAAAGGCCAAGGATGGAGGCTTAGATGTCATACAAACTTATGTATTTTGGAATGGACATGAACC...

Protein

Download Protein FASTA

727 aa · TkA01G455640|TK1151|PROTEIN

MLKIPRIKTHLLLLLVIIFSSVCSSINADVTYDDKAIIINGRRRILMSGSIHYPRSTPEMWPDLIKKAKDGGLDVIQTYVFWNGHEPSPGKYNFEGRYDLVKFIKIVQEAGLYVNLRIGPYVCAEWNFGGFPVWLKYVPGMAFRTDNEPFKNAMERFTQKIVNMMKSEELFEPQGGPIIMSQIENEYGPIEWDIGAPGKAYSKWAAQMADGLKTGVPWIMCKQEDAPDPMIDTCNGFYCEKFTPNKPYKPKMFTELWTGW...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G455640`
TK1151 ID	TkA01G455640
OH-1004 ID	LXL04_002147
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	67.700
Protein coverage (%)	TK1151 93.260 / OH-1004 76.239 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G455640

Location Chr01:114051662-114057957 (-)

Description Similar to Beta-galactosidase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g13750`	Beta-galactosidase 1.	No verified direct reference in this release
`At4g26140`	Beta-galactosidase 12.	No verified direct reference in this release
`At3g52840`	Beta-galactosidase 2.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002147 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005975 carbohydrate metabolic process Biological Process

GO:0009827 plant-type cell wall modification Biological Process

GO:0019388 galactose catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0048046 apoplast Cellular Component

GO:0004565 beta-galactosidase activity Molecular Function

GO:0030246 carbohydrate binding Molecular Function

KEGG gene cross-reference

ath:AT3G13750

dosa:Os01g0580200

dosa:Os03g0165400

sly:544167

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.411

Rank 1 · TkA01G455640 · TK1151

Lysosome / Vacuole0.259

Rank 2 · TkA01G455640 · TK1151

Cytoplasm0.117

Rank 3 · TkA01G455640 · TK1151

Endoplasmic reticulum0.110

Rank 4 · TkA01G455640 · TK1151

Cell membrane0.105

Rank 5 · TkA01G455640 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01301Glyco_hydro_3537-341 aa

PF02449Glyco_hydro_4258-189 aa

PF17834GHD365-420 aa

PF21467BetaGal_gal-bd471-538 aa

PF13364BetaGal_ABD2497-528 aa

PF13364BetaGal_ABD2617-659 aa

PF21467BetaGal_gal-bd620-706 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G455640	`PF01301`	Glyco_hydro_35	37	341	8.4e-122	407.5
TkA01G455640	`PF02449`	Glyco_hydro_42	58	189	2.2e-06	28.0
TkA01G455640	`PF17834`	GHD	365	420	4.7e-21	75.0
TkA01G455640	`PF21467`	BetaGal_gal-bd	471	538	1.6e-32	112.1
TkA01G455640	`PF13364`	BetaGal_ABD2	497	528	0.011	17.2
TkA01G455640	`PF13364`	BetaGal_ABD2	617	659	0.011	17.2
TkA01G455640	`PF21467`	BetaGal_gal-bd	620	706	1.6e-32	112.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SCW1`	Arabidopsis thaliana	sp\|Q9SCW1\|BGAL1_ARATH Beta-galactosidase 1	69.300%	Swiss-Prot	High
`Q9SCV0`	Arabidopsis thaliana	sp\|Q9SCV0\|BGA12_ARATH Beta-galactosidase 12	70.200%	Swiss-Prot	High
`Q9LFA6`	Arabidopsis thaliana	sp\|Q9LFA6\|BGAL2_ARATH Beta-galactosidase 2	68.500%	Swiss-Prot	High

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