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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G453230
Reference: TK1151 Chr: Chr01 Coordinates: 113422184-113423860 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1044 bp · TkA01G453230|TK1151|cDNA

AATCCTCAGCCGTAGATAAAACAAATCAGCCTAATATTTTCCTTCTACGTGTTATTCGCCATTTGACCACCACGATAACGCGTAGCGATAACAAAACAATCGATCAAAAAGCCCCGAAAAGAAACCCAAAGTCCTTGTACACAAAGCAAACGCACAAGCTTTTGGGAGCAAGAACGATAAGTTGTCTACAAGGTTTATTGGAGTTTTCTTTTCTTGAACGCTAATTACAACATGAGTTTCTTATTCGGCAAGAAGAAAAC...

CDS

Download CDS FASTA

678 bp · TkA01G453230|TK1151|CDS

ATGAGTTTCTTATTCGGCAAGAAGAAAACACCCGCTGAGCTCCTGCGGGAGAACAAGAGAATGCTTGATAAATCCATAAGAGAAATAGAACGAGAAAGACAAGGTTTGCAGACACAAGAGAAGAAACTGATCGTAGAAATCAAGAAAAGTGCCAAACAAGGTCAAATGGGAGCCGTTAAAGTGATGGCAAAAGACCTTATCAGAACACGCCACCAAATTGAAAAATTCTACAAACTCAAATCCCAACTCCAAGGCGTATC...

Protein

Download Protein FASTA

225 aa · TkA01G453230|TK1151|PROTEIN

MSFLFGKKKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLIVEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVSEVMGDAIDDALEGDEEEDETEELVSQVLDEIGIDINQELMNAPSGAVAVPAAKTKVAQAEAPAGAGGVVVAVVMMVGLIVIYRRG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G453230
TK1151 IDTkA01G453230
OH-1004 IDLXL04_002348
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.500
Protein coverage (%)TK1151 87.111 / OH-1004 84.483
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G453230
LocationChr01:113422184-113423860 (+)
DescriptionSimilar to VPS2.1: Vacuolar protein sorting-associated protein 2 homolog 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g06530 Component of the ESCRT-III complex, which is required for multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_002348 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006914 autophagy Biological Process
GO:0006997 nucleus organization Biological Process
GO:0007080 mitotic metaphase chromosome alignment Biological Process
GO:0010324 membrane invagination Biological Process
GO:0010458 exit from mitosis Biological Process
GO:0010824 regulation of centrosome duplication Biological Process
GO:0015031 protein transport Biological Process
GO:0019076 viral release from host cell Biological Process
GO:0031468 nuclear membrane reassembly Biological Process
GO:0032509 endosome transport via multivesicular body sorting pathway Biological Process
GO:0036258 multivesicular body assembly Biological Process
GO:0039702 viral budding via host ESCRT complex Biological Process
KEGG gene cross-reference
ath:AT2G06530
ddi:DDB_G0292400
dre:798901
mmu:68953
xla:432320
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.844
Rank 1 · TkA01G453230 · TK1151
Nucleus0.281
Rank 2 · TkA01G453230 · TK1151
Endoplasmic reticulum0.074
Rank 3 · TkA01G453230 · TK1151
Mitochondrion0.072
Rank 4 · TkA01G453230 · TK1151
Cell membrane0.060
Rank 5 · TkA01G453230 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03357Snf717-186 aa
PF04012PspA_IM3017-52 aa
PF08286Spc2417-80 aa
PF11068YlqD19-85 aa
PF08165FerA21-28 aa
PF31108SpoIIE_reg22-49 aa
PF21408MTR4-like_stalk24-91 aa
PF18470Cas9_a26-170 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G453230PF03357Snf7171862.2e-49168.1
TkA01G453230PF04012PspA_IM3017520.2811.5
TkA01G453230PF08286Spc2417801.310.0
TkA01G453230PF11068YlqD19852.89.0
TkA01G453230PF08165FerA21280.1113.1
TkA01G453230PF31108SpoIIE_reg22490.7110.0
TkA01G453230PF21408MTR4-like_stalk24910.08813.8
TkA01G453230PF18470Cas9_a261700.01615.6
TkA01G453230PF30514OB_PatR_C39930.05814.3
TkA01G453230PF22488Class_2_docking_dom40530.1912.9
TkA01G453230PF01357Expansin_C41960.01416.3
TkA01G453230PF04012PspA_IM30771590.2811.5
TkA01G453230PF31108SpoIIE_reg791280.7110.0
TkA01G453230PF21408MTR4-like_stalk1121410.08813.8
TkA01G453230PF31108SpoIIE_reg1151870.7110.0
TkA01G453230PF08165FerA1211310.1113.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SKI2Arabidopsis thalianasp|Q9SKI2|VPS2A_ARATH Vacuolar protein sorting-associated protein 2 homolog 192.000%Swiss-ProtHigh

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