TkA01G443100 | RubberDandelionOmics

Gene overview

TkA01G443100

Reference: TK1151 Chr: Chr01 Coordinates: 110834437-110838124 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2010 bp · TkA01G443100|TK1151|cDNA

CTGTCCCCAACAGACTCTTTCTTCCGGCCTCTTCTCAGCTTGTCCGTCACTTTCGCATTTGGTCGAACAGAAAGAGCTCATTACTCCATATCCCTATGTACTCATTACATTCCTTCGTTCTTTCAGTCTCTAGCTATTAACTTTCCGATGGCGTCACGAGATCCTGAGATCGAGGACGGGGGCGGAGGCGGCAGCCTCAAGAAGCCGCTCCTCCATACCGGAAGTTGGTACCGTATGGCTGGTATGAGCTCCAGGCAGTC...

CDS

Download CDS FASTA

1629 bp · TkA01G443100|TK1151|CDS

CTGTCCCCAACAGACTCTTTCTTCCGGCCTCTTCTCAGCTTGTCCGTCACTTTCGCATTTGGTCGAACAGAAAGAGCTCATTACTCCATATCCCTATGTACTCATTACATTCCTTCGTTCTTTCAGTCTCTAGCTATTAACTTTCCGATGGCGTCACGAGATCCTGAGATCGAGGACGGGGGCGGAGGCGGCAGCCTCAAGAAGCCGCTCCTCCATACCGGAAGTTGGTACCGTATGGCTGGTATGAGCTCCAGGCAGTC...

Protein

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542 aa · TkA01G443100|TK1151|PROTEIN

LSPTDSFFRPLLSLSVTFAFGRTERAHYSISLCTHYIPSFFQSLAINFPMASRDPEIEDGGGGGSLKKPLLHTGSWYRMAGMSSRQSSMFTSSAQILRESVSIFLCVFIVALGPIQFGFTCGYTNPMQADIITDLKLKISEFSVFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNILGWLAISFSKDYSFLYMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGILLAYLLGLFLPWRVLAVI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G443100`
TK1151 ID	TkA01G443100
OH-1004 ID	LXL04_030477
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	71.800
Protein coverage (%)	TK1151 89.483 / OH-1004 90.943 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G443100

Location Chr01:110834437-110838124 (+)

Description Similar to At1g75220: Sugar transporter ERD6-like 6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g75220`	Sugar transporter.	No verified direct reference in this release
`At1g19450`	Sugar transporter.	No verified direct reference in this release
`At5g18840`	Sugar transporter.	No verified direct reference in this release
`At2g48020`	Sugar transporter.	No verified direct reference in this release
`At1g54730`	Sugar transporter.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030477 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006829 zinc ion transport Biological Process

GO:0010030 positive regulation of seed germination Biological Process

GO:0042593 glucose homeostasis Biological Process

GO:0055085 transmembrane transport Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009705 plant-type vacuole membrane Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT1G19450

ath:AT1G54730

ath:AT1G75220

ath:AT2G48020

ath:AT5G18840

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.358

Rank 1 · TkA01G443100 · TK1151

Cell membrane0.333

Rank 2 · TkA01G443100 · TK1151

Endoplasmic reticulum0.123

Rank 3 · TkA01G443100 · TK1151

Cytoplasm0.100

Rank 4 · TkA01G443100 · TK1151

Golgi apparatus0.082

Rank 5 · TkA01G443100 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00083Sugar_tr107-541 aa

PF07690MFS_1117-491 aa

PF07690MFS_1378-533 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G443100	`PF00083`	Sugar_tr	107	541	8.5e-98	328.9
TkA01G443100	`PF07690`	MFS_1	117	491	4.3e-22	79.2
TkA01G443100	`PF07690`	MFS_1	378	533	4.3e-22	79.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FRL3`	Arabidopsis thaliana	sp\|Q9FRL3\|ERDL6_ARATH Sugar transporter ERD6-like 6	73.200%	Swiss-Prot	High
`Q93YP9`	Arabidopsis thaliana	sp\|Q93YP9\|ERDL4_ARATH Sugar transporter ERD6-like 4	70.200%	Swiss-Prot	High
`Q8LBI9`	Arabidopsis thaliana	sp\|Q8LBI9\|EDL16_ARATH Sugar transporter ERD6-like 16	44.300%	Swiss-Prot	Medium
`P93051`	Arabidopsis thaliana	sp\|P93051\|ERDL7_ARATH Sugar transporter ERD6-like 7	43.300%	Swiss-Prot	Medium
`Q3ECP7`	Arabidopsis thaliana	sp\|Q3ECP7\|ERDL5_ARATH Sugar transporter ERD6-like 5	45.400%	Swiss-Prot	Medium

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