Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1448 bp · TkA01G442090|TK1151|cDNA
TAGCATTTCTGTTACTGTTGGAAAACCAGAGCTTGAACAAATGGTGAAACAGATGACCTTTACTAGTTCTGAAGCCCAACGCTTGATAGCATTGGTGCATTCCAGAACCACGGAGGAGTCACCAACTCCTCTTTTAAGGCATGAAGCTTCAAAAACAAGTGGCTCGCTGAAAAAACATAAACATGGAGATGAGAGCGATAACTTCCAAGATGTTGTTTTTAGTTCAAGAGTTGTTGAAGAGGACACCGGTACTGACCATG...
1401 bp · TkA01G442090|TK1151|CDS
ATGGTGAAACAGATGACCTTTACTAGTTCTGAAGCCCAACGCTTGATAGCATTGGTGCATTCCAGAACCACGGAGGAGTCACCAACTCCTCTTTTAAGGCATGAAGCTTCAAAAACAAGTGGCTCGCTGAAAAAACATAAACATGGAGATGAGAGCGATAACTTCCAAGATGTTGTTTTTAGTTCAAGAGTTGTTGAAGAGGACACCGGTACTGACCATGGCCAAGCATTGAGACAAGATTCATTTAAGATTAAATCTAA...
Protein
Download Protein FASTA466 aa · TkA01G442090|TK1151|PROTEIN
MVKQMTFTSSEAQRLIALVHSRTTEESPTPLLRHEASKTSGSLKKHKHGDESDNFQDVVFSSRVVEEDTGTDHGQALRQDSFKIKSNATQHPTTIQSLPDELLSNIFIRLLAKQLAQMRSISKSWNALLSQSSFVNSHLHRSIHNNDQILLTFYTRNDYINPFTTHSCKSPHIELPNFIKLPVSPHPEYTRITIIGSVNGLICSSYIDSVIQIWNPSLSTVLNLPPYSMPFHGYNSMEISFRFGYDPKTDDYKVIKLTGL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA01G442090 |
|---|---|
| TK1151 ID | TkA01G442090 |
| OH-1004 ID | LXL04_002251 |
| Relationship / confidence | Sequence Supported Annotation Or Model Conflict / Review |
| Protein identity (%) | 98.300 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 40.592Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA01G442090 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:110566099-110567822 (-) | |||||||||
| Description | Similar to CPR1: F-box protein CPR1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0009626 plant-type hypersensitive response Biological Process GO:0016567 protein ubiquitination Biological Process GO:0031348 negative regulation of defense response Biological Process GO:0042177 negative regulation of protein catabolic process Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT3G06240 ath:AT4G12560 ath:AT4G22390 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF12937F-box-like95-132 aaPF00646F-box95-134 aaPF08268FBA_3166-400 aaPF07734FBA_1189-447 aaPF00646F-box394-413 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA01G442090 | PF12937 | F-box-like | 95 | 132 | 1.7e-06 | 28.4 |
| TkA01G442090 | PF00646 | F-box | 95 | 134 | 2.2e-06 | 28.1 |
| TkA01G442090 | PF08268 | FBA_3 | 166 | 400 | 8.2e-23 | 81.6 |
| TkA01G442090 | PF07734 | FBA_1 | 189 | 447 | 1.2e-18 | 67.9 |
| TkA01G442090 | PF00646 | F-box | 394 | 413 | 2.2e-06 | 28.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.