TkA01G441600 | RubberDandelionOmics

Gene overview

TkA01G441600

Reference: TK1151 Chr: Chr01 Coordinates: 110423392-110424606 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

432 bp · TkA01G441600|TK1151|cDNA

ATGCAACAACCCATCGACACATCCCTTACATGTATACCTTCAACTCACTATATATGGACTTTCCTAAAGGAGAACAAAAATTTAACTGGAACAACACGTTATGCAAGCTGCAATACTCATCTTGGAATTGAGCAAAGCCGACGTGATGATTTGGAGTCTCTTGGATATGTACTTCTATTTTTTCTTAGAGGAAGGTACCCATTTTGCTGTGATGATTTGAATTTGATTACATCTTTGATTGGACGATTCTCAAGTACCAA...

CDS

Download CDS FASTA

432 bp · TkA01G441600|TK1151|CDS

ATGCAACAACCCATCGACACATCCCTTACATGTATACCTTCAACTCACTATATATGGACTTTCCTAAAGGAGAACAAAAATTTAACTGGAACAACACGTTATGCAAGCTGCAATACTCATCTTGGAATTGAGCAAAGCCGACGTGATGATTTGGAGTCTCTTGGATATGTACTTCTATTTTTTCTTAGAGGAAGGTACCCATTTTGCTGTGATGATTTGAATTTGATTACATCTTTGATTGGACGATTCTCAAGTACCAA...

Protein

Download Protein FASTA

143 aa · TkA01G441600|TK1151|PROTEIN

MQQPIDTSLTCIPSTHYIWTFLKENKNLTGTTRYASCNTHLGIEQSRRDDLESLGYVLLFFLRGRYPFCCDDLNLITSLIGRFSSTNSHKKNKTQPHALPGHGENNSEAIRKDLEKHQGLAAGSTDGRVALKYFNPSSQNTDE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G441600`
TK1151 ID	TkA01G441600
OH-1004 ID	LXL04_005757
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	65.200
Protein coverage (%)	TK1151 99.301 / OH-1004 66.300 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G441600

Location Chr01:110423392-110424606 (+)

Description Similar to CKL4: Casein kinase 1-like protein 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g28880`	Protein kinase involved in blue light responses (e.g. hypocotyl elongation and flowering) by phosphorylating CRY2 to reduce its stability.	No verified direct reference in this release
`At4g28860`	Protein kinase involved in blue light responses (e.g. hypocotyl elongation and flowering) by phosphorylating CRY2 to reduce its stability.	No verified direct reference in this release
`At4g14340`	Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates.	No verified direct reference in this release
`At5g43320`	Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0622100`	Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates.	Roles of OsCKI1, a rice casein kinase I, in root development and plant hormone sensitivity.2003 · DOI: 10.1046/j.1365-313x.2003.01866.x Rice LTG1 is involved in adaptive growth and fitness under low ambient temperature.2014 · DOI: 10.1111/tpj.12487

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005757 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006897 endocytosis Biological Process

GO:0007165 signal transduction Biological Process

GO:0009637 response to blue light Biological Process

GO:0009640 photomorphogenesis Biological Process

GO:0009785 blue light signaling pathway Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT1G72710

ath:AT4G26100

ath:AT4G28860

ath:AT4G28880

ath:AT5G57015

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.454

Rank 1 · TkA01G441600 · TK1151

Cytoplasm0.440

Rank 2 · TkA01G441600 · TK1151

Mitochondrion0.133

Rank 3 · TkA01G441600 · TK1151

Cell membrane0.060

Rank 4 · TkA01G441600 · TK1151

Endoplasmic reticulum0.044

Rank 5 · TkA01G441600 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17667Pkinase_fungal24-60 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G441600	`PF17667`	Pkinase_fungal	24	60	0.079	12.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q93Z18`	Arabidopsis thaliana	sp\|Q93Z18\|CKL3_ARATH Casein kinase 1-like protein 3	87.000%	Swiss-Prot	Low
`Q8LPI7`	Arabidopsis thaliana	sp\|Q8LPI7\|CKL4_ARATH Casein kinase 1-like protein 4	84.800%	Swiss-Prot	Low
`Q39050`	Arabidopsis thaliana	sp\|Q39050\|CKL11_ARATH Casein kinase 1-like protein 11	82.600%	Swiss-Prot	Low
`Q9LSX4`	Arabidopsis thaliana	sp\|Q9LSX4\|CKL8_ARATH Casein kinase 1-like protein 8	82.600%	Swiss-Prot	Low
`Q6K9N1`	Oryza sativa subsp. japonica	sp\|Q6K9N1\|CKI1_ORYSJ Casein kinase 1	80.400%	Swiss-Prot	Low

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