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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G422060
Reference: TK1151 Chr: Chr01 Coordinates: 105387414-105389819 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1303 bp · TkA01G422060|TK1151|cDNA

ATACAATTGACTAACCTATCTCACCCTCACAGATTCTTGTGAACCTTGGTTGCTAAAAACATTGAGCATTTTTGAATCTGGTCCCGGATATACTCATCCGATCGGAAACTATGCCGCCATGGTCACGTGGCTCACCTTGGAACTCTAAATCCCCATTTTTGTCTTGCTCTCATTCGACCTTTTCTATGCTCCTCATCCTCCTCGTCCAATCAGTCTGATAGCAACTTCCATCTTCCCGTCAAACTTCCATCTTTCGGCTT...

CDS

Download CDS FASTA

555 bp · TkA01G422060|TK1151|CDS

ATGGCTGGTAAGATACCTGGAGTCGAAATCGCTCGGCGGAGGAGGTTCGGTGGGTGGTCTGATAATCCGTCGTTTCTCATCAATTCTGCTTTTGGATCTGCACGGAGCAGAGTTTTTTACCATAGTCATCTCACCTCCACTTCTTTCTCGCAAAGAAGATCAGATGAAGATGAGAAGCTTGGAGGTGTAGCCAGAAAAGCCAAACATAGACTTGATGGGAAGCTCAGAGGCCACTGGAAATCAGAAATCGACAGCCAAGA...

Protein

Download Protein FASTA

184 aa · TkA01G422060|TK1151|PROTEIN

MAGKIPGVEIARRRRFGGWSDNPSFLINSAFGSARSRVFYHSHLTSTSFSQRRSDEDEKLGGVARKAKHRLDGKLRGHWKSEIDSQERSEIGTKSSACMVVGDTQMEVFGLKKNGSKRFSWGRLWLNWKSSNQEECAVCLEKFKFSEKVTRMPCAHKFHSICLLPWLKSHAHCPCCRTSVLGST

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G422060
TK1151 IDTkA01G422060
OH-1004 IDLXL04_002771
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.400
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G422060
LocationChr01:105387414-105389819 (+)
DescriptionSimilar to RHY1A: Probable E3 ubiquitin-protein ligase RHY1A
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene IDPossible functionPapers / DOI
Os05g0488800 Possesses E3 ubiqutin-protein ligase activity in vitro.
Molecular dissection of Oryza sativa salt-induced RING Finger Protein 1 (OsSIRP1): possible involvement in the sensitivity response to salinity stress.2016 · DOI: 10.1111/ppl.12459
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_002771 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000209 protein polyubiquitination Biological Process
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport Biological Process
GO:0006893 Golgi to plasma membrane transport Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0034122 negative regulation of toll-like receptor signaling pathway Biological Process
GO:0034123 positive regulation of toll-like receptor signaling pathway Biological Process
GO:0034142 toll-like receptor 4 signaling pathway Biological Process
GO:0042059 negative regulation of epidermal growth factor receptor signaling pathway Biological Process
GO:0043162 ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway Biological Process
GO:0051865 protein autoubiquitination Biological Process
GO:0070534 protein K63-linked ubiquitination Biological Process
KEGG gene cross-reference
ath:AT1G49850
ath:AT3G19950
dme:Dmel_CG11982
dosa:Os05g0488800
mmu:67845
osa:4339152
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.563
Rank 1 · TkA01G422060 · TK1151
Cytoplasm0.320
Rank 2 · TkA01G422060 · TK1151
Cell membrane0.133
Rank 3 · TkA01G422060 · TK1151
Endoplasmic reticulum0.064
Rank 4 · TkA01G422060 · TK1151
Mitochondrion0.048
Rank 5 · TkA01G422060 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF26148VPS18_RING_C95-104 aa
PF12861zf-ANAPC11124-146 aa
PF27618Zn_ribbon_GTF2H2127-143 aa
PF29452FAR1_N132-176 aa
PF12678zf-rbx1133-177 aa
PF13920zf-C3HC4_3133-180 aa
PF26148VPS18_RING_C134-163 aa
PF13639zf-RING_2135-177 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G422060PF26148VPS18_RING_C951041.49.7
TkA01G422060PF12861zf-ANAPC111241460.0005320.7
TkA01G422060PF27618Zn_ribbon_GTF2H21271430.07713.3
TkA01G422060PF29452FAR1_N1321760.04914.4
TkA01G422060PF12678zf-rbx11331773.8e-0524.6
TkA01G422060PF13920zf-C3HC4_31331800.001119.5
TkA01G422060PF26148VPS18_RING_C1341631.49.7
TkA01G422060PF13639zf-RING_21351773.1e-1247.3
TkA01G422060PF17123zf-RING_111351632.6e-0937.3
TkA01G422060PF13923zf-C3HC4_21351768.9e-0832.5
TkA01G422060PF14634zf-RING_51351780.03614.8
TkA01G422060PF11793FANCL_C1351710.2612.3
TkA01G422060PF25998U-box_ZFPL11351710.3412.0
TkA01G422060PF00097zf-C3HC41361761.4e-0525.6
TkA01G422060PF13445zf-RING_UBOX1361740.002118.7
TkA01G422060PF14570zf-RING_41361781.99.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q6AVN2Oryza sativa subsp. japonicasp|Q6AVN2|SIRP1_ORYSJ E3 ubiquitin-protein ligase SIRP152.400%Swiss-ProtLow

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