TkA01G420560 | RubberDandelionOmics

Gene overview

TkA01G420560

Reference: TK1151 Chr: Chr01 Coordinates: 105043088-105046005 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2166 bp · TkA01G420560|TK1151|cDNA

TTGACTTCTAAATTACCAGTTCCAAACCCGAAACAAGCGCGGTTTCAACATTCATGAATTCAATATTCATGTAATCCACCGACTAAACCTAGCTGTTTTCTCTCTCTCACACACGCACAAATTATTAAATTAATCTTCCACAGATCTATTGGGTACAACATAACACACCCAGCATAAGATTCGTCATCTGTCTTTTTCATCTTTATCGATAACTTCAGATCATGGTCTTTATGCTTCACAATTGAATTGAATTACAACTT...

CDS

Download CDS FASTA

1698 bp · TkA01G420560|TK1151|CDS

ATGGATCAGTCAAGAGGAGGGGGAGCAGGTAGTAGAGTAGAGAAGAGAGGGTATGAGGGGAGAGTGGACGATGAAGACGATGATAGTACGCCTCAATCGAAAAAAGCCAAAGTACCGGGTTTAGCGAGTGTAATTGTTGAAGCTATGAAAGTCGATAGCTTGCAAAGACTTTGCTCTTCTTTAGAGCCTCTTTTCCGAAAAATTGTAAGCGAAGAAGTGGAACGTGCTTTGACCAAATACGGGCATGGTCAAATTGATGG...

Protein

Download Protein FASTA

565 aa · TkA01G420560|TK1151|PROTEIN

MDQSRGGGAGSRVEKRGYEGRVDDEDDDSTPQSKKAKVPGLASVIVEAMKVDSLQRLCSSLEPLFRKIVSEEVERALTKYGHGQIDGISSPPRIQPPEGKVLQLQFTTRMPPHLFTGGKVEGEQGASIHVVLLDATTGHVVQTGQESSSKLNVVVLEGDFNEEKNDNWTIDHFESHEVKAREGKRPLLTGDIQVTLNEGVGSLGDLSFTDNSSWIRSRKFRLGLKVASGYCVGIRIREAKSEAFAVKDHRGELYKKHYPP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G420560`
TK1151 ID	TkA01G420560
OH-1004 ID	LXL04_002793
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	92.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G420560

Location Chr01:105043088-105046005 (+)

Description Similar to CBP60E: Calmodulin-binding protein 60 E

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g24300`	Transcription activator that binds DNA in a sequence-specific manner, likely 5'-GAAATTTTGG-3', to promote the expression of target genes.	No verified direct reference in this release
`At4g31000`	Transcription activator that binds DNA in a sequence-specific manner, likely 5'-GAAATTTTGG-3', to promote the expression of target genes.	No verified direct reference in this release
`At5g57580`	Transcription activator that binds DNA in a sequence-specific manner, likely 5'-GAAATTTTGG-3', to promote the expression of target genes.	No verified direct reference in this release
`At2g18750`	Transcription activator that binds DNA in a sequence-specific manner, likely 5'-GAAATTTTGG-3', to promote the expression of target genes.	No verified direct reference in this release
`At4g25800`	Transcription activator that binds DNA in a sequence-specific manner, likely 5'-GAAATTTTGG-3', to promote the expression of target genes.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002793 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0080142 regulation of salicylic acid biosynthetic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0005516 calmodulin binding Molecular Function

GO:0043565 sequence-specific DNA binding Molecular Function

KEGG gene cross-reference

ath:AT2G18750

ath:AT2G24300

ath:AT4G25800

ath:AT4G31000

ath:AT5G57580

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.952

Rank 1 · TkA01G420560 · TK1151

Cytoplasm0.095

Rank 2 · TkA01G420560 · TK1151

Cell membrane0.040

Rank 3 · TkA01G420560 · TK1151

Endoplasmic reticulum0.027

Rank 4 · TkA01G420560 · TK1151

Plastid0.018

Rank 5 · TkA01G420560 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07887Calmodulin_bind102-249 aa

PF20451Calmod_bind_M261-327 aa

PF20452Calmod_bind_C332-394 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G420560	`PF07887`	Calmodulin_bind	102	249	4.9e-58	196.1
TkA01G420560	`PF20451`	Calmod_bind_M	261	327	4e-31	108.1
TkA01G420560	`PF20452`	Calmod_bind_C	332	394	1.3e-21	77.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4IPM3`	Arabidopsis thaliana	sp\|F4IPM3\|CB60E_ARATH Calmodulin-binding protein 60 E	61.000%	Swiss-Prot	High
`F4JR57`	Arabidopsis thaliana	sp\|F4JR57\|CB60F_ARATH Calmodulin-binding protein 60 F	60.000%	Swiss-Prot	High
`Q9FKL6`	Arabidopsis thaliana	sp\|Q9FKL6\|CB60B_ARATH Calmodulin-binding protein 60 B	50.600%	Swiss-Prot	High
`C0SV51`	Arabidopsis thaliana	sp\|C0SV51\|CB60C_ARATH Calmodulin-binding protein 60 C	51.600%	Swiss-Prot	High
`Q0WVV6`	Arabidopsis thaliana	sp\|Q0WVV6\|CB60D_ARATH Calmodulin-binding protein 60 D	51.500%	Swiss-Prot	High

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