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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G420500
Reference: TK1151 Chr: Chr01 Coordinates: 105017130-105019457 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1348 bp · TkA01G420500|TK1151|cDNA

CAAAAAATCACGCTGCCCTAAGCCCCTAACTCGTTTTCTGAGCGGGAGTTTGAGCGATCATTTGAGTCTCCAGCAGTCCTCCATCTCCGGCCAAGCTTTCTCCACCGGCGACGACGCTTCCAGACGGGCATTCCACCGCCGACGGCTGTTGTGCGATTTTCACAAGTATATCTTTGCATCATTAACCTTTTTCAATTATCTCATCCATCAACGTGCATGTTTTGAAATGGTTATCAATCTTTAAGGCTGGAGGGAGTGGT...

CDS

Download CDS FASTA

678 bp · TkA01G420500|TK1151|CDS

ATGTCTTTACGCAGACCCCCAATTCCTCGATTACTTCTCAACAACGTTTCCTGCATGAGAAACGCCCAACAGATCTTACGCCATACCAACATCTCAATTCACGACGGTGGAGCCCTAGTACTCACCGGAGCAAACGGCTCCGGCAAGTCAACATTCCTACGAATGCTCGCCGGATTCTCCAAACCATCTGCCGGTGAGATCCTCTGGAACGGCCATGACATCACCGAATCAGGAGTTTTCCACCAATACAAACTCCAACT...

Protein

Download Protein FASTA

225 aa · TkA01G420500|TK1151|PROTEIN

MSLRRPPIPRLLLNNVSCMRNAQQILRHTNISIHDGGALVLTGANGSGKSTFLRMLAGFSKPSAGEILWNGHDITESGVFHQYKLQLNWLSLKEAIKSNFTVLDNVQWFEVLESKQGKSLPALEFMGLGRLAKEKARMLSMGQRKRLQLARVMAMDRPIWLLDEPSVALDDEGVKLLEQMIADHRSQGGIVIVATHLPIAIEDAMILRLPPRFPRRITLVDMLPH

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G420500
TK1151 IDTkA01G420500
OH-1004 IDLXL04_002796
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 97.333 / OH-1004 77.385
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G420500
LocationChr01:105017130-105019457 (+)
DescriptionSimilar to ABCI1: ABC transporter I family member 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g63270 Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this does not seem to be the case, but its exact role is uncertain. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_002796 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0017004 cytochrome complex assembly Biological Process
GO:1903607 cytochrome c biosynthetic process Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0016020 membrane Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0015439 ABC-type heme transporter activity Molecular Function
GO:0016887 ATP hydrolysis activity Molecular Function
KEGG gene cross-reference
ath:AT1G63270
gox:GOX1571
mag:amb4180
nmu:Nmul_A1217
rpd:RPD_0524
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.383
Rank 1 · TkA01G420500 · TK1151
Cytoplasm0.352
Rank 2 · TkA01G420500 · TK1151
Nucleus0.242
Rank 3 · TkA01G420500 · TK1151
Plastid0.040
Rank 4 · TkA01G420500 · TK1151
Peroxisome0.039
Rank 5 · TkA01G420500 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF27840ScmC18-56 aa
PF13476AAA_2324-56 aa
PF07693KAP_NTPase24-56 aa
PF13175AAA_1526-77 aa
PF00005ABC_tran27-166 aa
PF13555AAA_2928-53 aa
PF02367TsaE30-57 aa
PF13191AAA_1631-192 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G420500PF27840ScmC18560.01815.4
TkA01G420500PF13476AAA_2324560.002719.1
TkA01G420500PF07693KAP_NTPase24560.09412.6
TkA01G420500PF13175AAA_1526770.001818.6
TkA01G420500PF00005ABC_tran271662.4e-28100.1
TkA01G420500PF13555AAA_2928538.2e-0523.0
TkA01G420500PF02367TsaE30570.2512.0
TkA01G420500PF13191AAA_16311920.001320.0
TkA01G420500PF03193RsgA_GTPase32650.3111.6
TkA01G420500PF00437T2SSE33610.1111.8
TkA01G420500PF25199nSTAND_NTPase534750.02115.4
TkA01G420500PF02463SMC_N35531.2e-0835.4
TkA01G420500PF13401AAA_22351640.0008420.4
TkA01G420500PF20720nSTAND335570.03714.4
TkA01G420500PF00503G-alpha36570.2211.3
TkA01G420500PF05272VapE-like_dom37580.02714.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C8T1Arabidopsis thalianasp|Q9C8T1|AB1I_ARATH ABC transporter I family member 184.300%Swiss-ProtHigh

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