TkA01G416310 | RubberDandelionOmics

Gene overview

TkA01G416310

Reference: TK1151 Chr: Chr01 Coordinates: 103876997-103879430 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2132 bp · TkA01G416310|TK1151|cDNA

TTTCATTCTATTCGTCGTCTTGTTTCCGATGGCTTGTTTACGCCTTTAGTTTACTGAATACATACATTTCAACGTTGATCATATAACCAATGACCCGACCGACCCGAATATCCAACTCACAATTTGGGCGTATTTTATATCTATATATATAGTTCAAATAGCACATCAGCTCATCAATGCATGTACATACTCTCTCCACCAATCTCTCCCCTTCTCTCTCTTTCCTGCATAATTCCCTGGCGTAGACTTTTCTAGAGGAC...

CDS

Download CDS FASTA

1533 bp · TkA01G416310|TK1151|CDS

ATGGGAGATGATGGCTACCTTCTCAGAGGCAATTTATCAAACACCTTCTCTGCATTGGCCGTAAGTGGGAGGCTGAATCAAAATACTTCCGACAATCAATCCAACAGAAAATTGATCGAAGAAGACGACATTCTGCAACAGATCGAAGAACAAGAAACAGAAATTCTACATTTGCGGAAACACCTAGCTGAATACGCAGTCAAGGAAGCACAAATTCAAAACGAGAAAAAACTACTCGAAAAACGAATTGCTTCAGTCCA...

Protein

Download Protein FASTA

510 aa · TkA01G416310|TK1151|PROTEIN

MGDDGYLLRGNLSNTFSALAVSGRLNQNTSDNQSNRKLIEEDDILQQIEEQETEILHLRKHLAEYAVKEAQIQNEKKLLEKRIASVHRAFDQQQQDLSQSTSKAISYRQEIIEENIRLGYALQIAQEERSIFISSLVPLLSDLSLHPPPLDAYSIVSNLRILFKHNKERLNIADEKLRESQYQPLLLHSHRRELPLDNSSSSSSSSSRPPWTHTHTHPHTQTNTHTNTHSNISPSPEPETNEEEPPNSHYLPSILEEEPS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G416310`
TK1151 ID	TkA01G416310
OH-1004 ID	LXL04_002855
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA01G416310`
Location	Chr01:103876997-103879430 (-)
Description	Protein of unknown function
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_002855` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	No functional description available
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.546

Rank 1 · TkA01G416310 · TK1151

Nucleus0.245

Rank 2 · TkA01G416310 · TK1151

Cell membrane0.215

Rank 3 · TkA01G416310 · TK1151

Golgi apparatus0.126

Rank 4 · TkA01G416310 · TK1151

Lysosome / Vacuole0.117

Rank 5 · TkA01G416310 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01496V_ATPase_I27-109 aa

PF03233Cauli_AT32-87 aa

PF06156YabA43-102 aa

PF06156YabA163-188 aa

PF16709SCAB-Ig288-356 aa

PF23197IG_AIR9289-369 aa

PF23080DUF7046379-401 aa

PF23080DUF7046406-503 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G416310	`PF01496`	V_ATPase_I	27	109	3.3	6.2
TkA01G416310	`PF03233`	Cauli_AT	32	87	0.2	12.3
TkA01G416310	`PF06156`	YabA	43	102	2.9	9.2
TkA01G416310	`PF06156`	YabA	163	188	2.9	9.2
TkA01G416310	`PF16709`	SCAB-Ig	288	356	0.0079	16.9
TkA01G416310	`PF23197`	IG_AIR9	289	369	2.5e-08	34.4
TkA01G416310	`PF23080`	DUF7046	379	401	1.7e-24	87.3
TkA01G416310	`PF23080`	DUF7046	406	503	1.7e-24	87.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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