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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G414420
Reference: TK1151 Chr: Chr01 Coordinates: 103418608-103422848 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2656 bp · TkA01G414420|TK1151|cDNA

CTTAAAACAATGAAACTACCCGAAGTGATAAAGGAGTGATAAAGTAGGTTAGGAGTATTAATTATGAAAGCACCTTAATCGTCCTATCGAACCTCTGGTGGGTCACCACCGTCTTTCTGGTATTTTGATCCCAAATTCTCAAATCCAATTTCATTATGATCGTCACATCCGTTTTGGGAGCTAATCTTTGTTTGATTTCGTGAATTTCGATAAAATCCCTCGCCAAGCTTTGTACCTTTCGGAAAATTCGGAAATCTCAT...

CDS

Download CDS FASTA

1452 bp · TkA01G414420|TK1151|CDS

ATGAGGTTCTTCAACCTTATGGGGAACTCCTTTGGGTGCTCGGCATCTGGAGAACGCCTTGTTTCGGCTGCAAGAGATGGCGATGTTCAAGAAGCCAAAGCCTTGCTCGAATATAACCCTCGACTTGCTAAATATTCAACTTTTGGTGTTCGGAATTCCCCCCTTCATTACTCTGCTGCCCAAGGTCACCATGAGATTGTTTCGCTCTTGATTGAATCTGGCGTTGATATCAACCTCAGGAATTATCGTGGCCAGACTGC...

Protein

Download Protein FASTA

483 aa · TkA01G414420|TK1151|PROTEIN

MRFFNLMGNSFGCSASGERLVSAARDGDVQEAKALLEYNPRLAKYSTFGVRNSPLHYSAAQGHHEIVSLLIESGVDINLRNYRGQTALMQACQYGHWEVVLTLVLYKANIHKADYLNGGTALHLAALNGHSRCIRILHADYIPSVPNFLELVNGKSRIEEFVCESNEGSLYKTINRAADGGVSALHMAALNGHFDSVHLLIDLGASVTEVTVEDGTTIDLIGAGSTPLHYAACGGNAQCCQILIAKGASLTAQNAKGWTP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G414420
TK1151 IDTkA01G414420
OH-1004 IDLXL04_002884
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G414420
LocationChr01:103418608-103422848 (+)
DescriptionSimilar to XBOS32: Probable E3 ubiquitin-protein ligase XBOS32
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g57740 E3 ubiquitin-protein ligase that mediates ubiquitination of ACC synthases (ACS).
The ubiquitin ligase XBAT32 regulates lateral root development in Arabidopsis.2004 · DOI: 10.1111/j.1365-313x.2004.02266.x
Arabidopsis RING E3 ligase XBAT32 regulates lateral root production through its role in ethylene biosynthesis.2010 · DOI: 10.1104/pp.110.156976
At5g07270 Possesses E3 ubiquitin-protein ligase activity when associated with the E2 enzyme UBC8 in vitro. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0791200 Probable E3 ubiquitin-protein ligase XBOS32. No verified direct reference in this release
Os08g0258200 Probable E3 ubiquitin-protein ligase XBOS35. No verified direct reference in this release
Os10g0521600 Probable E3 ubiquitin-protein ligase XBOS33. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_002884 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0009733 response to auxin Biological Process
GO:0010311 lateral root formation Biological Process
GO:0010366 negative regulation of ethylene biosynthetic process Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0051865 protein autoubiquitination Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0004842 ubiquitin-protein transferase activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT5G07270
ath:AT5G57740
dosa:Os02g0791200
dosa:Os08g0258200
dosa:Os10g0521600
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.541
Rank 1 · TkA01G414420 · TK1151
Nucleus0.314
Rank 2 · TkA01G414420 · TK1151
Cell membrane0.171
Rank 3 · TkA01G414420 · TK1151
Golgi apparatus0.098
Rank 4 · TkA01G414420 · TK1151
Mitochondrion0.087
Rank 5 · TkA01G414420 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24521Ank_KRIT117-74 aa
PF13857Ank_520-57 aa
PF12796Ank_221-113 aa
PF13637Ank_421-71 aa
PF13606Ank_321-40 aa
PF00023Ank23-37 aa
PF00023Ank52-81 aa
PF13857Ank_552-81 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G414420PF24521Ank_KRIT117742.6e-1040.9
TkA01G414420PF13857Ank_520575.8e-2794.2
TkA01G414420PF12796Ank_2211132.9e-37127.8
TkA01G414420PF13637Ank_421712.8e-2898.0
TkA01G414420PF13606Ank_321407e-2790.9
TkA01G414420PF00023Ank23371.2e-35120.3
TkA01G414420PF00023Ank52811.2e-35120.3
TkA01G414420PF13857Ank_552815.8e-2794.2
TkA01G414420PF13606Ank_352787e-2790.9
TkA01G414420PF13637Ank_4551032.8e-2898.0
TkA01G414420PF13857Ank_5701085.8e-2794.2
TkA01G414420PF00023Ank841141.2e-35120.3
TkA01G414420PF13606Ank_3841117e-2790.9
TkA01G414420PF24521Ank_KRIT1851372.6e-1040.9
TkA01G414420PF13637Ank_4881382.8e-2898.0
TkA01G414420PF12796Ank_21132082.9e-37127.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q6NLQ8Arabidopsis thalianasp|Q6NLQ8|XB32_ARATH E3 ubiquitin-protein ligase XBAT3260.500%Swiss-ProtHigh
Q4FE45Arabidopsis thalianasp|Q4FE45|XB33_ARATH E3 ubiquitin-protein ligase XBAT3351.200%Swiss-ProtHigh
Q6KAE5Oryza sativa subsp. japonicasp|Q6KAE5|XB32_ORYSJ Probable E3 ubiquitin-protein ligase XBOS3260.700%Swiss-ProtHigh
Q7EZ44Oryza sativa subsp. japonicasp|Q7EZ44|XB35_ORYSJ Probable E3 ubiquitin-protein ligase XBOS3561.300%Swiss-ProtHigh
Q337A0Oryza sativa subsp. japonicasp|Q337A0|XB33_ORYSJ Probable E3 ubiquitin-protein ligase XBOS3351.600%Swiss-ProtHigh

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