TkA01G411950 | RubberDandelionOmics

Gene overview

TkA01G411950

Reference: TK1151 Chr: Chr01 Coordinates: 102746828-102748124 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

886 bp · TkA01G411950|TK1151|cDNA

TGATTATAAGCGATGAATGGGGGATAAAACTGGTTAAGAGATTTCGTCAACGAAAAATCCTCATCTAGGCGAGTTTGTTGCGAGATTTCGATCATATATAAAGAGGTAACAGCAAGCAAGGTTGCTGTGACCGCAGAATTCACCAGATAAACCTCTACCCAAGGATGTTTGAATTTTGTAAATAAAACGTGCTTACACTTAAATCCTTCGTTAGGGATCATGCGGGTGGAAATGAGAAGATCAAAGAGTTGGTTCCAGGG...

CDS

Download CDS FASTA

417 bp · TkA01G411950|TK1151|CDS

ATGTCACTGGTAAAGAAGAAGAGGACCCTGCTGTTTTTACTGGCGACACACTGTTTGTTGCTGGTTGTGGTAAGTTTTTTGAGGGGACAGCAGAACAAATGCATGAGTCACTGTGTGACTTTAGCTTCTTTACCAAAACCGACTCGAGTTTACTGTGGCCATGAGTATACAGTGAAGAATTTGCAGTTTGCTCAAACAGTTGAACCAGACAATGAGAAAATATCAGAAAAGTTATCATGGGCTCAGAAACAGAGGCAATC...

Protein

Download Protein FASTA

138 aa · TkA01G411950|TK1151|PROTEIN

MSLVKKKRTLLFLLATHCLLLVVVSFLRGQQNKCMSHCVTLASLPKPTRVYCGHEYTVKNLQFAQTVEPDNEKISEKLSWAQKQRQSGLPTIPSTIEEELETNPFMRSDLPQVQERVGCKSAVEAMREIRQRKDNWRG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G411950`
TK1151 ID	TkA01G411950
OH-1004 ID	LXL04_025344
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	99.000
Protein coverage (%)	TK1151 74.638 / OH-1004 54.211 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G411950

Location Chr01:102746828-102748124 (+)

Description Similar to GLX2-2: Hydroxyacylglutathione hydrolase cytoplasmic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g10850`	Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.	The metal ion requirements of Arabidopsis thaliana Glx2-2 for catalytic activity.2010 · DOI: 10.1007/s00775-009-0593-6

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025344 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006749 glutathione metabolic process Biological Process

GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione Biological Process

GO:0019853 L-ascorbic acid biosynthetic process Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005759 mitochondrial matrix Cellular Component

GO:0005829 cytosol Cellular Component

GO:0099503 secretory vesicle Cellular Component

GO:0004416 hydroxyacylglutathione hydrolase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT3G10850

bta:509274

dre:336977

gga:416537

xtr:100216043

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.547

Rank 1 · TkA01G411950 · TK1151

Nucleus0.293

Rank 2 · TkA01G411950 · TK1151

Mitochondrion0.190

Rank 3 · TkA01G411950 · TK1151

Endoplasmic reticulum0.099

Rank 4 · TkA01G411950 · TK1151

Peroxisome0.084

Rank 5 · TkA01G411950 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16123HAGH_C55-136 aa

PF25757TPR_DNAAF581-131 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G411950	`PF16123`	HAGH_C	55	136	2.7e-31	108.5
TkA01G411950	`PF25757`	TPR_DNAAF5	81	131	0.16	11.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O24496`	Arabidopsis thaliana	sp\|O24496\|GLO2C_ARATH Hydroxyacylglutathione hydrolase cytoplasmic	71.800%	Swiss-Prot	High

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