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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G409100
Reference: TK1151 Chr: Chr01 Coordinates: 102093046-102094982 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1209 bp · TkA01G409100|TK1151|cDNA

AAAACACATTATTTCCGTACCCTATTCATTCCAAGTTCCCACCCAGAAATCTTGGTTGTTCGTCTCCGAAGAGAAGTCAAGGACCGTCGTAAGCGATCGTTAGTGCTATAGCAGCGCTCAACAATGGCGATGGCAACCACCATAAACAACGGAGACAAGGTAATGCTGCTAGAAGCTCCGCCATCTTCCCGGCCTTCTTGGTCCAGTAGTGCAGCGCAGATCGACGCATTGCCCTACATAGACGACGAATACGGCGACCC...

CDS

Download CDS FASTA

762 bp · TkA01G409100|TK1151|CDS

ATGGCGATGGCAACCACCATAAACAACGGAGACAAGGTAATGCTGCTAGAAGCTCCGCCATCTTCCCGGCCTTCTTGGTCCAGTAGTGCAGCGCAGATCGACGCATTGCCCTACATAGACGACGAATACGGCGACCCCAAAGTGAAAGCGGAAGTTGACCGTTTAATTGAAGACGAGATGCGCCGCAGCTCTAAGAAACCCTCTGATTATCTCAAAGACCTCCCTCCTGTTGCCAAGTTTAATTTCGAGGATTATCCAAT...

Protein

Download Protein FASTA

253 aa · TkA01G409100|TK1151|PROTEIN

MAMATTINNGDKVMLLEAPPSSRPSWSSSAAQIDALPYIDDEYGDPKVKAEVDRLIEDEMRRSSKKPSDYLKDLPPVAKFNFEDYPMVAREYERVRSGKPMVPLDMSRYGLDIPPINKRNDESAWKQTLHKSQRLLHHQVIRLENLDLMSKYGADVWKQHNQRLEAFLSRMQAQAAELNEKIETVNRERKYHQQNTAYELNALSAQWKELCEKNIGIEAACLNIETYIEQLKAEAAERGWNLDINMENGSSLP

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G409100
TK1151 IDTkA01G409100
OH-1004 IDLXL04_002992
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.200
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G409100
LocationChr01:102093046-102094982 (+)
DescriptionSimilar to MOS4: Pre-mRNA-splicing factor SPF27 homolog
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g18165 Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity.
Regulation of plant innate immunity by three proteins in a complex conserved across the plant and animal kingdoms.2007 · DOI: 10.1101/gad.1559607

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_002992 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000375 RNA splicing, via transesterification reactions Biological Process
GO:0000380 alternative mRNA splicing, via spliceosome Biological Process
GO:0000398 mRNA splicing, via spliceosome Biological Process
GO:0006397 mRNA processing Biological Process
GO:0008380 RNA splicing Biological Process
GO:0030163 protein catabolic process Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0045087 innate immune response Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0051225 spindle assembly Biological Process
GO:0097061 dendritic spine organization Biological Process
GO:0000974 Prp19 complex Cellular Component
KEGG gene cross-reference
ath:AT3G18165
dre:493614
hsa:10286
mmu:68183
xtr:394520
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.828
Rank 1 · TkA01G409100 · TK1151
Cytoplasm0.234
Rank 2 · TkA01G409100 · TK1151
Cell membrane0.028
Rank 3 · TkA01G409100 · TK1151
Mitochondrion0.027
Rank 4 · TkA01G409100 · TK1151
Endoplasmic reticulum0.014
Rank 5 · TkA01G409100 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05700BCAS232-237 aa
PF27720SSNA149-58 aa
PF05615THOC774-194 aa
PF25683URGCP_GTPase119-219 aa
PF03836IQGAP_helical120-233 aa
PF27720SSNA1121-137 aa
PF04632FUSC127-222 aa
PF02601Exonuc_VII_L129-209 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G409100PF05700BCAS2322371.1e-73248.0
TkA01G409100PF27720SSNA149582.78.9
TkA01G409100PF05615THOC7741940.01216.6
TkA01G409100PF25683URGCP_GTPase1192190.3910.1
TkA01G409100PF03836IQGAP_helical1202331.29.8
TkA01G409100PF27720SSNA11211372.78.9
TkA01G409100PF04632FUSC1272221.08.6
TkA01G409100PF02601Exonuc_VII_L1292090.989.5
TkA01G409100PF28907ZapB_rel1481870.5711.6
TkA01G409100PF28716PPi_PEPCK_C1541940.2213.2
TkA01G409100PF21865TLN1-like_RS1552250.05614.3
TkA01G409100PF27720SSNA11582302.78.9
TkA01G409100PF00435Spectrin1602130.02315.9
TkA01G409100PF28907ZapB_rel2042360.5711.6
TkA01G409100PF05615THOC72052340.01216.6
TkA01G409100PF00435Spectrin2192420.02315.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q949S9Arabidopsis thalianasp|Q949S9|SPF27_ARATH Pre-mRNA-splicing factor SPF27 homolog60.900%Swiss-ProtHigh

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