TkA01G409000 | RubberDandelionOmics

Gene overview

TkA01G409000

Reference: TK1151 Chr: Chr01 Coordinates: 102064802-102066566 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1007 bp · TkA01G409000|TK1151|cDNA

ATGCTGCTTTCAGGTGTTCAACATACTGGGATCCCAGCAAACGACAAGAATAGAATTAAGGCAACAGGTGAAGGGGCATTTAAATTTGCAGATCTTTTTAAGGAGAAGCTTAATATCAATCTTGATAAGGTGGAAGAAATGAGCAATCTTGTATCAGGAGCAAATTTTTTGTTAAAGGCAGTGCCATCTGAAGCATTCACATACGTGAATGGGCAGAGGAATTATGTGCAGATTGATCATAATGATTTATATCCCTATCT...

CDS

Download CDS FASTA

507 bp · TkA01G409000|TK1151|CDS

ATGCTGCTTTCAGGTGTTCAACATACTGGGATCCCAGCAAACGACAAGAATAGAATTAAGGCAACAGGTGAAGGGGCATTTAAATTTGCAGATCTTTTTAAGGAGAAGCTTAATATCAATCTTGATAAGGTGGAAGAAATGAGCAATCTTGTATCAGGAGCAAATTTTTTGTTAAAGGCAGTGCCATCTGAAGCATTCACATACGTGAATGGGCAGAGGAATTATGTGCAGATTGATCATAATGATTTATATCCCTATCT...

Protein

Download Protein FASTA

168 aa · TkA01G409000|TK1151|PROTEIN

MLLSGVQHTGIPANDKNRIKATGEGAFKFADLFKEKLNINLDKVEEMSNLVSGANFLLKAVPSEAFTYVNGQRNYVQIDHNDLYPYLLVNIGSGVSMIKVDGDGKFERVSGTSVGGGTFWGLGKLLTKCKSFDDLLKMSYQKIGLSSTAIASSFGKAISETKNLKSIT

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G409000`
TK1151 ID	TkA01G409000
OH-1004 ID	LXL04_020857
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	82.900
Protein coverage (%)	TK1151 95.833 / OH-1004 47.013 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G409000

Location Chr01:102064802-102066566 (+)

Description Similar to PANK2: Pantothenate kinase 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g60440`	Catalyzes the phosphorylation of pantothenate the first step in CoA biosynthesis.	4'-phosphopantetheine and coenzyme A biosynthesis in plants.2003 · DOI: 10.1074/jbc.m306321200 Plant coenzyme A biosynthesis: characterization of two pantothenate kinases from Arabidopsis.2006 · DOI: 10.1007/s11103-006-0037-4
`At4g32180`	Catalyzes the phosphorylation of pantothenate the first step in CoA biosynthesis.	Plant coenzyme A biosynthesis: characterization of two pantothenate kinases from Arabidopsis.2006 · DOI: 10.1007/s11103-006-0037-4

Rice

Reference gene ID	Possible function	Papers / DOI
`Os09g0533100`	Catalyzes the phosphorylation of pantothenate the first step in CoA biosynthesis.	No verified direct reference in this release
`Os06g0207000`	Catalyzes the phosphorylation of pantothenate the first step in CoA biosynthesis.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_020857 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0015937 coenzyme A biosynthetic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0004594 pantothenate kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0016787 hydrolase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G60440

ath:AT4G32180

dosa:Os06g0207000

dosa:Os09g0533100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.574

Rank 1 · TkA01G409000 · TK1151

Nucleus0.321

Rank 2 · TkA01G409000 · TK1151

Mitochondrion0.085

Rank 3 · TkA01G409000 · TK1151

Extracellular0.075

Rank 4 · TkA01G409000 · TK1151

Cell membrane0.069

Rank 5 · TkA01G409000 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03630Fumble15-140 aa

PF03630Fumble139-163 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G409000	`PF03630`	Fumble	15	140	6.9e-58	197.1
TkA01G409000	`PF03630`	Fumble	139	163	6.9e-58	197.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O80765`	Arabidopsis thaliana	sp\|O80765\|PANK1_ARATH Pantothenate kinase 1	67.000%	Swiss-Prot	High
`Q8L5Y9`	Arabidopsis thaliana	sp\|Q8L5Y9\|PANK2_ARATH Pantothenate kinase 2	65.100%	Swiss-Prot	High
`Q0J035`	Oryza sativa subsp. japonica	sp\|Q0J035\|PANK2_ORYSJ Pantothenate kinase 2	62.000%	Swiss-Prot	High
`Q69TF4`	Oryza sativa subsp. japonica	sp\|Q69TF4\|PANK1_ORYSJ Pantothenate kinase 1	52.400%	Swiss-Prot	High

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