TkA01G407130 | RubberDandelionOmics

Gene overview

TkA01G407130

Reference: TK1151 Chr: Chr01 Coordinates: 101633057-101638290 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1495 bp · TkA01G407130|TK1151|cDNA

CTTCTTCTCCTTTTCTAGGCTGCTTTCTTTTAGGAGTAAAAGGAACAGTTCACTATGTATCCATCACTGATCTGCAATATATATGTATATAACGCAGCATTTGATACATCAAACACATATCTGCAATCAGTATGTATTCCTACAATAGCGGTAGTCAACCACCATCTTTTGGAGATGTGAGGCAAATCGACGTTTCTGAACCTTCCTACGGTATTCCGATGGATAGTGATGGACAGCCACCATCGGTTAACGACGTCGGT...

CDS

Download CDS FASTA

528 bp · TkA01G407130|TK1151|CDS

ATGTATTCCTACAATAGCGGTAGTCAACCACCATCTTTTGGAGATGTGAGGCAAATCGACGTTTCTGAACCTTCCTACGGTATTCCGATGGATAGTGATGGACAGCCACCATCGGTTAACGACGTCGGTAGAAGAGAAGCATCTCAAAGTGAGGCATCGTTCACCCGGTATGAGGGTCCTGATGCGCTTGAAGTTCAGCAGTATAATCTGGTCAACTCATCCGCAGCACGGATCCCTGAAGAAGTGAAGATCCCTGTGAT...

Protein

Download Protein FASTA

175 aa · TkA01G407130|TK1151|PROTEIN

MYSYNSGSQPPSFGDVRQIDVSEPSYGIPMDSDGQPPSVNDVGRREASQSEASFTRYEGPDALEVQQYNLVNSSAARIPEEVKIPVIRNPWTEDEHKLFLLGLQIVGKGDWRGISRNFVKTRTPTQVASHAQKYFRRQSNLNRRRRRSSLFDITTDSVAVMPTDEQKVHEVYFAG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G407130`
TK1151 ID	TkA01G407130
OH-1004 ID	LXL04_002977
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	80.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G407130

Location Chr01:101633057-101638290 (+)

Description Similar to KUA1: Transcription factor KUA1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g47390`	Transcriptional repressor.	A novel Arabidopsis MYB-like transcription factor, MYBH, regulates hypocotyl elongation by enhancing auxin accumulation.2013 · DOI: 10.1093/jxb/ert223 Transcriptional control of ROS homeostasis by KUODA1 regulates cell expansion during leaf development.2014 · DOI: 10.1038/ncomms4767 A single-repeat MYB transcription repressor, MYBH, participates in regulation of leaf senescence in Arabidopsis.2015 · DOI: 10.1007/s11103-015-0321-2
`At5g08520`	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'.	Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.2015 · DOI: 10.1104/pp.15.00962

Rice

Reference gene ID	Possible function	Papers / DOI
`Os10g0561400`	Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters.	Three novel MYB proteins with one DNA binding repeat mediate sugar and hormone regulation of alpha-amylase gene expression.2002 · DOI: 10.1105/tpc.001735 A novel MYBS3-dependent pathway confers cold tolerance in rice.2010 · DOI: 10.1104/pp.110.153015
`UniProt: B8A9B2`	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002977 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009646 response to absence of light Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009723 response to ethylene Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009739 response to gibberellin Biological Process

GO:0009744 response to sucrose Biological Process

GO:0009751 response to salicylic acid Biological Process

KEGG gene cross-reference

ath:AT5G08520

ath:AT5G47390

sot:102577613

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.920

Rank 1 · TkA01G407130 · TK1151

Cytoplasm0.163

Rank 2 · TkA01G407130 · TK1151

Cell membrane0.030

Rank 3 · TkA01G407130 · TK1151

Endoplasmic reticulum0.017

Rank 4 · TkA01G407130 · TK1151

Plastid0.011

Rank 5 · TkA01G407130 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00249Myb_DNA-binding88-135 aa

PF25826DUF795291-143 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G407130	`PF00249`	Myb_DNA-binding	88	135	3.6e-11	43.7
TkA01G407130	`PF25826`	DUF7952	91	143	0.1	13.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LVS0`	Arabidopsis thaliana	sp\|Q9LVS0\|KUA1_ARATH Transcription factor KUA1	71.600%	Swiss-Prot	Low
`Q9FNN6`	Arabidopsis thaliana	sp\|Q9FNN6\|SRM1_ARATH Transcription factor SRM1	68.000%	Swiss-Prot	Low
`Q7XC57`	Oryza sativa subsp. japonica	sp\|Q7XC57\|MYBS3_ORYSJ Transcription factor MYBS3	74.000%	Swiss-Prot	Low
`B8A9B2`	Oryza sativa subsp. indica	sp\|B8A9B2\|MYBS1_ORYSI Transcription factor MYBS1	74.200%	Swiss-Prot	Low

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