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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G402810
Reference: TK1151 Chr: Chr01 Coordinates: 100648767-100652601 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3024 bp · TkA01G402810|TK1151|cDNA

GATAAGAAATGACAAAGAATTCGAAATCCACGTTGGAACCCACGCCATGCCTTGCATTTCGATTTTCGAATTCGAAATCCACACTCTCAAGCGCGAAAACAGAGGTACTACGACCCACCCCATTTCAAATTTCAGCAAATATAATACCTCCATTAAAATATCTCCTTCACTGCCTATGGATTCCCTTCCAGTTCCTCACTCCTTGATACAGCTAATCTCCCCCATTCTCTTGTATCATTCCAGGCTTGATCTTCATCTTG...

CDS

Download CDS FASTA

2301 bp · TkA01G402810|TK1151|CDS

ATGAAGATGCATGCTCCATTGAAATCAAAAGGGATCGCGACCAGGGTTAACAGCCAACATGTAATTTTTGAGCTAAAACAACGTGTTATTCTCTCATTAAACAAGATCGCTGATAGAGACACATATGAAATTGGGGTTGAAGAACTCGGAAGAACAATCTCAAGTTTAACTCCAGATGGGGTTTCTCCATTCTTGTCATGCATTCTAGATACCGATTCTGAACAGAAGATAGCTGTCAGAAAAGAATGTATAAAACTAAT...

Protein

Download Protein FASTA

766 aa · TkA01G402810|TK1151|PROTEIN

MKMHAPLKSKGIATRVNSQHVIFELKQRVILSLNKIADRDTYEIGVEELGRTISSLTPDGVSPFLSCILDTDSEQKIAVRKECIKLMGTMATFHQDLIVPHLNKMVISIIKRLKDPDSVVRNACIETMGILASKTSTTDNEPDGTFVMLVRPLFEALGEQNKHVQFGSALCLSRVIDHTRDPPLSILQRMLIRTTKMLKNPHFMAKPAMIELNRSIIQAGGASTQSTLNGAMSSIQEGLKNSDWRTRKAACEALAEIASS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G402810
TK1151 IDTkA01G402810
OH-1004 IDLXL04_003033
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.300
Protein coverage (%)TK1151 99.608 / OH-1004 98.579
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G402810
LocationChr01:100648767-100652601 (+)
DescriptionSimilar to TOR1L2: TORTIFOLIA1-like protein 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g07170 TORTIFOLIA1-like protein 2. No verified direct reference in this release
At1g50890 Plant-specific microtubule-associated protein (MAP) that regulates the orientation of cortical microtubules and the direction of organ growth.
Arabidopsis SPIRAL2 promotes uninterrupted microtubule growth by suppressing the pause state of microtubule dynamics.2008 · DOI: 10.1242/jcs.030221
At4g27060 Plant-specific microtubule-associated protein (MAP) that regulates the orientation of cortical microtubules and the direction of organ growth.
Arabidopsis SPIRAL2 promotes uninterrupted microtubule growth by suppressing the pause state of microtubule dynamics.2008 · DOI: 10.1242/jcs.030221
At1g27210 TORTIFOLIA1-like protein 4. No verified direct reference in this release
At1g59850 TORTIFOLIA1-like protein 5. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_003033 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009826 unidimensional cell growth Biological Process
GO:0010031 circumnutation Biological Process
GO:0170002 halotropism Biological Process
GO:0005634 nucleus Cellular Component
GO:0005874 microtubule Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0010005 cortical microtubule, transverse to long axis Cellular Component
GO:0055028 cortical microtubule Cellular Component
GO:0008017 microtubule binding Molecular Function
KEGG gene cross-reference
ath:AT1G27210
ath:AT1G50890
ath:AT2G07170
ath:AT4G27060
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.550
Rank 1 · TkA01G402810 · TK1151
Nucleus0.337
Rank 2 · TkA01G402810 · TK1151
Cell membrane0.195
Rank 3 · TkA01G402810 · TK1151
Golgi apparatus0.062
Rank 4 · TkA01G402810 · TK1151
Lysosome / Vacuole0.053
Rank 5 · TkA01G402810 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24492HEAT_ECM298-39 aa
PF24714TOR1L1_N23-300 aa
PF10392COG5_N44-100 aa
PF13646HEAT_246-90 aa
PF12755Vac14_Fab1_bd49-123 aa
PF23271HEAT_GCN152-141 aa
PF24987HEAT_EF3_N52-128 aa
PF25801HEAT_GCN1_C_266-176 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G402810PF24492HEAT_ECM298390.0006220.7
TkA01G402810PF24714TOR1L1_N233002.1e-119398.7
TkA01G402810PF10392COG5_N441000.7210.8
TkA01G402810PF13646HEAT_246902.1e-0938.3
TkA01G402810PF12755Vac14_Fab1_bd491230.0003921.7
TkA01G402810PF23271HEAT_GCN1521411.3e-0732.6
TkA01G402810PF24987HEAT_EF3_N521280.004717.6
TkA01G402810PF25801HEAT_GCN1_C_2661760.04713.8
TkA01G402810PF25782TPR_CAND1711610.001120.0
TkA01G402810PF23227HEAT_MROH2B_C741280.01515.4
TkA01G402810PF25757TPR_DNAAF5761770.02214.7
TkA01G402810PF02985HEAT77922.3e-1143.6
TkA01G402810PF13646HEAT_2781352.1e-0938.3
TkA01G402810PF13513HEAT_EZ791292.4e-0731.8
TkA01G402810PF24492HEAT_ECM29831370.0006220.7
TkA01G402810PF10508Proteasom_PSMB831340.2310.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4IK92Arabidopsis thalianasp|F4IK92|TORL2_ARATH TORTIFOLIA1-like protein 244.200%Swiss-ProtMedium
F4I6M4Arabidopsis thalianasp|F4I6M4|TORL1_ARATH TORTIFOLIA1-like protein 125.900%Swiss-ProtLow
Q9T041Arabidopsis thalianasp|Q9T041|TOR1_ARATH Microtubule-associated protein TORTIFOLIA130.300%Swiss-ProtMedium
Q93ZH1Arabidopsis thalianasp|Q93ZH1|TORL4_ARATH TORTIFOLIA1-like protein 438.600%Swiss-ProtLow
Q9XIE4Arabidopsis thalianasp|Q9XIE4|TORL5_ARATH TORTIFOLIA1-like protein 529.300%Swiss-ProtLow

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