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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G387250
Reference: TK1151 Chr: Chr01 Coordinates: 96629486-96629932 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

447 bp · TkA01G387250|TK1151|cDNA

ATGGACCAACAAGGGCACGGGCAGGCCCCAGGGATGAACACAGTGAACACCACATCTCAAATACCCTACACCATGCCCCCATACCCCCCAAACCAAATGATGGGAATCGTCCCCCCTGCCCCGGTCAACCCTCCCAAACCTCCGGCCTCCCGTCCCCACCCGCCCAACTCGCCCAACAACAACTCGCCTACCAACACATCCACCAACAACAACAACAACAACTCCACCAACAACTCCAAAACTTCTGGCCAACCAATACC...

CDS

Download CDS FASTA

447 bp · TkA01G387250|TK1151|CDS

ATGGACCAACAAGGGCACGGGCAGGCCCCAGGGATGAACACAGTGAACACCACATCTCAAATACCCTACACCATGCCCCCATACCCCCCAAACCAAATGATGGGAATCGTCCCCCCTGCCCCGGTCAACCCTCCCAAACCTCCGGCCTCCCGTCCCCACCCGCCCAACTCGCCCAACAACAACTCGCCTACCAACACATCCACCAACAACAACAACAACAACTCCACCAACAACTCCAAAACTTCTGGCCAACCAATACC...

Protein

Download Protein FASTA

148 aa · TkA01G387250|TK1151|PROTEIN

MDQQGHGQAPGMNTVNTTSQIPYTMPPYPPNQMMGIVPPAPVNPPKPPASRPHPPNSPNNNSPTNTSTNNNNNNSTNNSKTSGQPIPRNRTNHRLQKPLPPSRPNQENHESGRRCPHDLRGGPRDIRAGMRDVYFGTHFAVMESHGGE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G387250
TK1151 IDTkA01G387250
OH-1004 IDLXL04_003182
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)95.500
Protein coverage (%)TK1151 29.730 / OH-1004 17.121
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G387250
LocationChr01:96629486-96629932 (-)
DescriptionSimilar to NFYC9: Nuclear transcription factor Y subunit C-9
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_003182 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0006357 regulation of transcription by RNA polymerase II Biological Process
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0009740 gibberellic acid mediated signaling pathway Biological Process
GO:0009908 flower development Biological Process
GO:0010029 regulation of seed germination Biological Process
GO:0010468 regulation of gene expression Biological Process
GO:0045893 positive regulation of DNA-templated transcription Biological Process
GO:0048574 long-day photoperiodism, flowering Biological Process
GO:0048579 negative regulation of long-day photoperiodism, flowering Biological Process
GO:0048586 regulation of long-day photoperiodism, flowering Biological Process
KEGG gene cross-reference
ath:AT1G08970
ath:AT1G54830
ath:AT3G48590
ath:AT5G63470
dosa:Os06g0667100
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.619
Rank 1 · TkA01G387250 · TK1151
Cytoplasm0.388
Rank 2 · TkA01G387250 · TK1151
Mitochondrion0.043
Rank 3 · TkA01G387250 · TK1151
Cell membrane0.040
Rank 4 · TkA01G387250 · TK1151
Endoplasmic reticulum0.029
Rank 5 · TkA01G387250 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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