TkA01G373200 | RubberDandelionOmics

Gene overview

TkA01G373200

Reference: TK1151 Chr: Chr01 Coordinates: 93118501-93130889 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

5561 bp · TkA01G373200|TK1151|cDNA

CCCGCACAAAAAACCCGAATCAAGGCTTCGAAATCCTTCCTACTTATAGTTATAGTAGTAATTTGCTCCTCGCACACAAACTCGAAGCTTAACAATGGCGACATCAACAGTATCATCCTCTTCGTCATATTTCACAGGGAAATCAGATGAAGAAATCGAGGAAATGCTTGATCGAATGCTTACTCGATTGGCCATGTGCGATGACCCCCAACTAGAAAACTTGCTCCTCAAGCTACTTCCTGTTACCATTTTCTCGCTCT...

CDS

Download CDS FASTA

5451 bp · TkA01G373200|TK1151|CDS

ATGGCGACATCAACAGTATCATCCTCTTCGTCATATTTCACAGGGAAATCAGATGAAGAAATCGAGGAAATGCTTGATCGAATGCTTACTCGATTGGCCATGTGCGATGACCCCCAACTAGAAAACTTGCTCCTCAAGCTACTTCCTGTTACCATTTTCTCGCTCTCCCGTCCGTCTTCTGCCGTCAGGACCAAGGTGATGGAAATCCTAAGCCATGTCAACAAGAGAGTGAAACACCAACAACAAATAGGTTTACCTTT...

Protein

Download Protein FASTA

1816 aa · TkA01G373200|TK1151|PROTEIN

MATSTVSSSSSYFTGKSDEEIEEMLDRMLTRLAMCDDPQLENLLLKLLPVTIFSLSRPSSAVRTKVMEILSHVNKRVKHQQQIGLPLEELWELYMEANTAPMVRNFCIVYIEMAFDRVTKEKKENIAPTMIANISKLPPQHQDIVFRIVTKVIGECHSSKINDEIAAKYKLITGSQDKEMFVEFCLHTLLYQPPSTSGGSSPGLSVSQSNRVAGKSPLNHDMLLVRKLGLLNVIDVMDLPAELVYPLYVAACVDRHEPVI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G373200`
TK1151 ID	TkA01G373200
OH-1004 ID	LXL04_003329
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA01G373200`
Location	Chr01:93118501-93130889 (-)
Description	Similar to ECPAS: Proteasome adapter and scaffold protein ECM29
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_003329` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0036503 ERAD pathway Biological Process GO:0043248 proteasome assembly Biological Process GO:0000502 proteasome complex Cellular Component GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005769 early endosome Cellular Component GO:0005770 late endosome Cellular Component GO:0005771 multivesicular body Cellular Component GO:0005783 endoplasmic reticulum Cellular Component GO:0005793 endoplasmic reticulum-Golgi intermediate compartment Cellular Component GO:0005813 centrosome Cellular Component
KEGG gene cross-reference	dme:Dmel_CG8858 hsa:23392 mmu:230249 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.534

Rank 1 · TkA01G373200 · TK1151

Nucleus0.339

Rank 2 · TkA01G373200 · TK1151

Golgi apparatus0.148

Rank 3 · TkA01G373200 · TK1151

Lysosome / Vacuole0.109

Rank 4 · TkA01G373200 · TK1151

Cell membrane0.097

Rank 5 · TkA01G373200 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13001ECM29_N25-506 aa

PF24492HEAT_ECM2927-82 aa

PF12348CLASP_N28-123 aa

PF24714TOR1L1_N32-78 aa

PF24987HEAT_EF3_N38-66 aa

PF12755Vac14_Fab1_bd40-80 aa

PF23271HEAT_GCN141-83 aa

PF30357RELCH_N46-81 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G373200	`PF13001`	ECM29_N	25	506	1.2e-132	443.9
TkA01G373200	`PF24492`	HEAT_ECM29	27	82	9.7e-56	189.0
TkA01G373200	`PF12348`	CLASP_N	28	123	0.26	11.6
TkA01G373200	`PF24714`	TOR1L1_N	32	78	5.8e-06	26.6
TkA01G373200	`PF24987`	HEAT_EF3_N	38	66	2e-12	48.1
TkA01G373200	`PF12755`	Vac14_Fab1_bd	40	80	1.9e-05	25.9
TkA01G373200	`PF23271`	HEAT_GCN1	41	83	7.4e-15	56.2
TkA01G373200	`PF30357`	RELCH_N	46	81	0.0023	18.4
TkA01G373200	`PF25757`	TPR_DNAAF5	51	80	3.8e-05	23.7
TkA01G373200	`PF13646`	HEAT_2	55	72	0.017	16.1
TkA01G373200	`PF22958`	Ltn1_1st	86	139	0.0029	17.8
TkA01G373200	`PF24492`	HEAT_ECM29	398	445	9.7e-56	189.0
TkA01G373200	`PF12348`	CLASP_N	405	495	0.26	11.6
TkA01G373200	`PF23731`	ARM_ECM29_C	572	626	1.3e-07	32.8
TkA01G373200	`PF23702`	ARM_ECM29	626	720	5.1e-12	46.5
TkA01G373200	`PF13646`	HEAT_2	646	670	0.017	16.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser

Gene Card