TkA01G361880 | RubberDandelionOmics

Gene overview

TkA01G361880

Reference: TK1151 Chr: Chr01 Coordinates: 89928926-89931521 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

687 bp · TkA01G361880|TK1151|cDNA

ATGGCCACTCCTGCCACCACAACTGTCACTGCTCCTACCGCCCAACAACTTGTCTATTCCGTTACCAATGTTTACAATCAGTTTAGTTTCAAACTGACATCCGAAGGTTCGAAATATAAACTATGGTGCAGAATATTCCTTGACATGTGTAAGGGTGCTAAGTGGCCCAGCTCGCCATGCCTTGGGCCGGCCCTGGTGCTAGGTCACATTAACGGTAAATCCAAGCCTAATGGCGAAGATGATGAAGATTGGCAGTCTAT...

CDS

Download CDS FASTA

687 bp · TkA01G361880|TK1151|CDS

ATGGCCACTCCTGCCACCACAACTGTCACTGCTCCTACCGCCCAACAACTTGTCTATTCCGTTACCAATGTTTACAATCAGTTTAGTTTCAAACTGACATCCGAAGGTTCGAAATATAAACTATGGTGCAGAATATTCCTTGACATGTGTAAGGGTGCTAAGTGGCCCAGCTCGCCATGCCTTGGGCCGGCCCTGGTGCTAGGTCACATTAACGGTAAATCCAAGCCTAATGGCGAAGATGATGAAGATTGGCAGTCTAT...

Protein

Download Protein FASTA

228 aa · TkA01G361880|TK1151|PROTEIN

MATPATTTVTAPTAQQLVYSVTNVYNQFSFKLTSEGSKYKLWCRIFLDMCKGAKWPSSPCLGPALVLGHINGKSKPNGEDDEDWQSIDSHVKSWFYSTCDPNVLQEQFRNTKKCASSITDYCHNLKHLADALKDVDSDITELELVMQILRGYRPPTKASWMLLCSISAYQAQMPFYQPTGPAMAPNQQLNSAFGQPTMGYNRPNNTVLQQQPAPSLFGSSVPVQQAHQ

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G361880`
TK1151 ID	TkA01G361880
OH-1004 ID	LXL04_034484
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	61.700
Protein coverage (%)	TK1151 66.228 / OH-1004 25.633 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA01G361880`
Location	Chr01:89928926-89931521 (-)
Description	Similar to GIP: Copia protein
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_034484` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006281 DNA repair Biological Process GO:0006310 DNA recombination Biological Process GO:0006508 proteolysis Biological Process GO:0015074 DNA integration Biological Process GO:0071897 DNA biosynthetic process Biological Process GO:0042575 DNA polymerase complex Cellular Component GO:0003676 nucleic acid binding Molecular Function GO:0003964 RNA-directed DNA polymerase activity Molecular Function GO:0004190 aspartic-type endopeptidase activity Molecular Function GO:0004519 endonuclease activity Molecular Function GO:0005524 ATP binding Molecular Function GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.443

Rank 1 · TkA01G361880 · TK1151

Nucleus0.406

Rank 2 · TkA01G361880 · TK1151

Extracellular0.103

Rank 3 · TkA01G361880 · TK1151

Mitochondrion0.074

Rank 4 · TkA01G361880 · TK1151

Endoplasmic reticulum0.058

Rank 5 · TkA01G361880 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14223Retrotran_gag_214-37 aa

PF14223Retrotran_gag_267-100 aa

PF14223Retrotran_gag_2103-150 aa

PF09726Macoilin110-171 aa

PF29854MCM3AP_GANP_C143-182 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G361880	`PF14223`	Retrotran_gag_2	14	37	5.5e-05	23.7
TkA01G361880	`PF14223`	Retrotran_gag_2	67	100	5.5e-05	23.7
TkA01G361880	`PF14223`	Retrotran_gag_2	103	150	5.5e-05	23.7
TkA01G361880	`PF09726`	Macoilin	110	171	0.12	11.7
TkA01G361880	`PF29854`	MCM3AP_GANP_C	143	182	0.077	12.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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