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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G355910
Reference: TK1151 Chr: Chr01 Coordinates: 88369029-88372477 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1713 bp · TkA01G355910|TK1151|cDNA

AAAAAGAAAAACAATTAAAAAAGAAAAGGGATCTCAGAAGCATGTCAGCATATTTAGGGGGACGCATGAAATCTGAGACTTCTGTTCTCTAATCAACCAATTTTTTCGAAAAAATTGATGTGCTTAGAGGTTCATGCAAACAATACTCACACCGTTGCCAGGATTTTGAAAAAAATTAGTGCTTAGTTTTGGGGATGATTGTTAGAGATGACTCGAGACGTGTTAATGGTGCAGCCGGAGACCGAAACGACGTCGGGAGA...

CDS

Download CDS FASTA

1176 bp · TkA01G355910|TK1151|CDS

ATGACTCGAGACGTGTTAATGGTGCAGCCGGAGACCGAAACGACGTCGGGAGATGGTGGCGTTGGTATGCTGGTGAAGAAGAAGGGGACAGCGAGTGCCAGAAGTTGGATATCGATCGATTCTAATGTGAATGAGACGATTATGGATATCGATAAGTACGCAATCATGCATAGAGTTCAGATTCATGCTCGTGATCTTCGTATCCTTGACCCTCTTTTATCTTATCCTTCTACAATTTTGGGCCGTGAAAGGGCAATCGT...

Protein

Download Protein FASTA

391 aa · TkA01G355910|TK1151|PROTEIN

MTRDVLMVQPETETTSGDGGVGMLVKKKGTASARSWISIDSNVNETIMDIDKYAIMHRVQIHARDLRILDPLLSYPSTILGRERAIVLNLEHIKAIITAEEVLLRDPSDDNVIPVVEELRRRLPVINASHGDLHEVDEEDESPFEFRALEVFLEAICSFHAARTTELETDAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELERLLDDDDDMADLYLSRKLSSASPVSDSGGGAVSWFHGSPTIGSKISRA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G355910
TK1151 IDTkA01G355910
OH-1004 IDLXL04_003465
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)96.900
Protein coverage (%)TK1151 99.233 / OH-1004 91.304
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G355910
LocationChr01:88369029-88372477 (+)
DescriptionSimilar to MRS2-7: Magnesium transporter MRS2-7
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g64560 Low-affinity magnesium transporter that mediates the influx of magnesium.
Magnesium transporter AtMGT9 is essential for pollen development in Arabidopsis.2009 · DOI: 10.1038/cr.2009.58
At5g09690 Low-affinity magnesium transporter that mediates the influx of magnesium.
AtMGT7: An Arabidopsis gene encoding a low-affinity magnesium transporter.2008 · DOI: 10.1111/j.1744-7909.2008.00770.x
UniProt: P0CZ21 Magnesium transporter that may mediate the influx of magnesium. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: B8AJT9 Magnesium transporter that may mediate the influx of magnesium. No verified direct reference in this release
Os03g0742400 Magnesium transporter that may mediate the influx of magnesium. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_003465 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009555 pollen development Biological Process
GO:0015693 magnesium ion transport Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005789 endoplasmic reticulum membrane Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
GO:0015095 magnesium ion transmembrane transporter activity Molecular Function
KEGG gene cross-reference
ath:AT5G09690
ath:AT5G64560
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.581
Rank 1 · TkA01G355910 · TK1151
Cytoplasm0.174
Rank 2 · TkA01G355910 · TK1151
Nucleus0.129
Rank 3 · TkA01G355910 · TK1151
Lysosome / Vacuole0.093
Rank 4 · TkA01G355910 · TK1151
Endoplasmic reticulum0.075
Rank 5 · TkA01G355910 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22099MRS2-like41-231 aa
PF05235CHAD92-121 aa
PF01544CorA122-222 aa
PF05235CHAD147-218 aa
PF28121VPA1267168-214 aa
PF05055DUF677180-224 aa
PF00038Filament183-216 aa
PF14712Snapin_Pallidin186-214 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G355910PF22099MRS2-like412313.8e-35122.0
TkA01G355910PF05235CHAD921210.311.7
TkA01G355910PF01544CorA1222225.4e-1039.7
TkA01G355910PF05235CHAD1472180.311.7
TkA01G355910PF28121VPA12671682140.07114.0
TkA01G355910PF05055DUF6771802240.2411.0
TkA01G355910PF00038Filament1832160.0001921.9
TkA01G355910PF14712Snapin_Pallidin1862140.3712.0
TkA01G355910PF29562DUF85671872140.9110.0
TkA01G355910PF05377FlaC_arch1892162.29.5
TkA01G355910PF25450Rab11-FIP31892184.18.4
TkA01G355910PF08663HalX1982230.113.7
TkA01G355910PF00038Filament2573260.0001921.9
TkA01G355910PF05055DUF6772683080.2411.0
TkA01G355910PF25450Rab11-FIP32683194.18.4
TkA01G355910PF22099MRS2-like2693183.8e-35122.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FLG2Arabidopsis thalianasp|Q9FLG2|MRS22_ARATH Magnesium transporter MRS2-278.400%Swiss-ProtHigh
Q304A0Arabidopsis thalianasp|Q304A0|MRS27_ARATH Magnesium transporter MRS2-772.100%Swiss-ProtHigh
P0CZ21Arabidopsis thalianasp|P0CZ21|MRS28_ARATH Magnesium transporter MRS2-863.300%Swiss-ProtHigh
B8AJT9Oryza sativa subsp. indicasp|B8AJT9|MRS2I_ORYSI Magnesium transporter MRS2-I81.200%Swiss-ProtHigh
Q10D38Oryza sativa subsp. japonicasp|Q10D38|MRS2I_ORYSJ Magnesium transporter MRS2-I81.900%Swiss-ProtHigh

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