TkA01G352530 | RubberDandelionOmics

Gene overview

TkA01G352530

Reference: TK1151 Chr: Chr01 Coordinates: 87541800-87547855 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2145 bp · TkA01G352530|TK1151|cDNA

TTAGTATCGTGTTGAAGGCAAAGACCATCATCTCTCTTATCCCTCACTTTTCTCAAAAACAATCTTTTTCCGTATAAGACGAAGACGACTCTGCGTCTGCTTCATTTCTTTCAATCTGCACAGATCCTTTGGAATCTAACCCCTAAAAAGGATTTTCCCCGTCGATTTATTGCTTTAAGATTGATTTCGTCCGATGGCACCTTAAAATCTCTCTCAGTATTCACTTCTATCTAAACCTTTTCCTCTGTTTTTTCATTTGT...

CDS

Download CDS FASTA

1401 bp · TkA01G352530|TK1151|CDS

ATGGATCATGTGATTGGTGGAAAGTTTAAGCTTGGGAGGAAGATTGGCAGTGGATCTTTCGGCGAGCTCTATTTGGGAGTAAATGTACAAACTGGAGAAGAAGTTGCGGTCAAGCTGGAATCTACAAAGACTAAGCACCCTCAACTTCACTATGAGTCCAAATTGTACATGCTTCTTCAAGGAGGAACTGGCGTGCCCCACCTGAAATGGTTTGGTGTTGAAGGGGAGTACAATGCTATGGCTATAGACCTTCTTGGACC...

Protein

Download Protein FASTA

466 aa · TkA01G352530|TK1151|PROTEIN

MDHVIGGKFKLGRKIGSGSFGELYLGVNVQTGEEVAVKLESTKTKHPQLHYESKLYMLLQGGTGVPHLKWFGVEGEYNAMAIDLLGPSLEDLFNYCNRKLTLKSVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKFRDLQTHRHIPYRENKNLTGTARYASANTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTPIEVLCKSYPSEFTQYFHYCRSLRF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G352530`
TK1151 ID	TkA01G352530
OH-1004 ID	LXL04_003475
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G352530

Location Chr01:87541800-87547855 (-)

Description Similar to CKL11: Casein kinase 1-like protein 11

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g14340`	Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates.	No verified direct reference in this release
`At3g23340`	Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates.	No verified direct reference in this release
`At1g04440`	Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates.	No verified direct reference in this release
`At5g43320`	Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates.	No verified direct reference in this release
`At1g03930`	Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_003475 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0001558 regulation of cell growth Biological Process

GO:0006897 endocytosis Biological Process

GO:0007165 signal transduction Biological Process

GO:0009409 response to cold Biological Process

GO:0009741 response to brassinosteroid Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0009850 auxin metabolic process Biological Process

GO:0016310 phosphorylation Biological Process

GO:0043622 cortical microtubule organization Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0048364 root development Biological Process

GO:0051510 regulation of unidimensional cell growth Biological Process

KEGG gene cross-reference

ath:AT3G23340

ath:AT4G14340

ath:AT4G28540

ath:AT5G43320

dosa:Os02g0622100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.607

Rank 1 · TkA01G352530 · TK1151

Nucleus0.428

Rank 2 · TkA01G352530 · TK1151

Cell membrane0.076

Rank 3 · TkA01G352530 · TK1151

Mitochondrion0.047

Rank 4 · TkA01G352530 · TK1151

Endoplasmic reticulum0.036

Rank 5 · TkA01G352530 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase10-228 aa

PF07714PK_Tyr_Ser-Thr10-270 aa

PF14531Kinase-like10-52 aa

PF03109ABC115-42 aa

PF14531Kinase-like88-136 aa

PF03109ABC193-157 aa

PF06293Kdo112-151 aa

PF01636APH117-153 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G352530	`PF00069`	Pkinase	10	228	4.3e-25	89.3
TkA01G352530	`PF07714`	PK_Tyr_Ser-Thr	10	270	5.8e-14	52.7
TkA01G352530	`PF14531`	Kinase-like	10	52	0.0098	15.9
TkA01G352530	`PF03109`	ABC1	15	42	0.00072	19.5
TkA01G352530	`PF14531`	Kinase-like	88	136	0.0098	15.9
TkA01G352530	`PF03109`	ABC1	93	157	0.00072	19.5
TkA01G352530	`PF06293`	Kdo	112	151	0.055	13.6
TkA01G352530	`PF01636`	APH	117	153	0.039	14.4
TkA01G352530	`PF17667`	Pkinase_fungal	118	206	2.2e-07	30.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q39050`	Arabidopsis thaliana	sp\|Q39050\|CKL11_ARATH Casein kinase 1-like protein 11	72.600%	Swiss-Prot	High
`Q9LW62`	Arabidopsis thaliana	sp\|Q9LW62\|CKL10_ARATH Casein kinase 1-like protein 10	73.200%	Swiss-Prot	High
`Q5XF24`	Arabidopsis thaliana	sp\|Q5XF24\|CKL13_ARATH Casein kinase 1-like protein 13	69.700%	Swiss-Prot	High
`Q9LSX4`	Arabidopsis thaliana	sp\|Q9LSX4\|CKL8_ARATH Casein kinase 1-like protein 8	70.300%	Swiss-Prot	High
`Q9ZWB3`	Arabidopsis thaliana	sp\|Q9ZWB3\|CKL9_ARATH Casein kinase 1-like protein 9	70.600%	Swiss-Prot	High

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