TkA01G348570 | RubberDandelionOmics

Gene overview

TkA01G348570

Reference: TK1151 Chr: Chr01 Coordinates: 86562896-86564862 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1056 bp · TkA01G348570|TK1151|cDNA

TTACTAACCCTTAACCTATTAAGGCTCCATAAACCCTTTAACGCTCCAATATACCAGATAAATAGGTCTTGATTATCAGAAAACGCCATGTCTGAGACTAAAAAGGAACTCATAAAACCAAATGTAGTAGACAGTGATGATGATGGTACAATTTGCTTGGGCGAATCTTTCTTCATAGATGACAACTATGAGCTTACTACGTTTACGTTTGGGCCTCATGTTCTTCAGCTTCTTTGTCTCCAATCAGCTTCTACTGATTT...

CDS

Download CDS FASTA

639 bp · TkA01G348570|TK1151|CDS

ATGTCTGAGACTAAAAAGGAACTCATAAAACCAAATGTAGTAGACAGTGATGATGATGGTACAATTTGCTTGGGCGAATCTTTCTTCATAGATGACAACTATGAGCTTACTACGTTTACGTTTGGGCCTCATGTTCTTCAGCTTCTTTGTCTCCAATCAGCTTCTACTGATTTTGATTTGACGGGGCAGCTGGTATGGCCTGGTGCAAGGCTGTTGAACGAATACCTTTCAAATAACGCTGAGCTACTGCAAGGATGTTC...

Protein

Download Protein FASTA

212 aa · TkA01G348570|TK1151|PROTEIN

MSETKKELIKPNVVDSDDDGTICLGESFFIDDNYELTTFTFGPHVLQLLCLQSASTDFDLTGQLVWPGARLLNEYLSNNAELLQGCSAALIGGVIVGITGILCSRFCNEVVLTDHNDEILNKNIDLHESSENPNSCAALSAEKLEWGNTDQLNQILQKHPEGFDLVLGADIYILGFQQNSVPPLFETVKELLLLRSGKRDASSYWVTSPVQK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G348570`
TK1151 ID	TkA01G348570
OH-1004 ID	LXL04_003514
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	94.000
Protein coverage (%)	TK1151 93.396 / OH-1004 78.175 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA01G348570`
Location	Chr01:86562896-86564862 (-)
Description	Similar to eef1akmt3: EEF1A lysine methyltransferase 3
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_003514` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0000183 rDNA heterochromatin formation Biological Process GO:0006479 protein methylation Biological Process GO:0018022 peptidyl-lysine methylation Biological Process GO:0032259 methylation Biological Process GO:1903333 negative regulation of protein folding Biological Process GO:0005654 nucleoplasm Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005813 centrosome Cellular Component GO:0005829 cytosol Cellular Component GO:0032991 protein-containing complex Cellular Component GO:0008168 methyltransferase activity Molecular Function GO:0008276 protein methyltransferase activity Molecular Function
KEGG gene cross-reference	fgr:FGSG_13370 hsa:151194 mmu:67099 xtr:549414 yli:2905822 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.650

Rank 1 · TkA01G348570 · TK1151

Nucleus0.504

Rank 2 · TkA01G348570 · TK1151

Mitochondrion0.061

Rank 3 · TkA01G348570 · TK1151

Endoplasmic reticulum0.047

Rank 4 · TkA01G348570 · TK1151

Cell membrane0.039

Rank 5 · TkA01G348570 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10294Methyltransf_1661-192 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G348570	`PF10294`	Methyltransf_16	61	192	7.1e-09	36.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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